DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cyp12a4 and si:ch211-113j14.1

DIOPT Version :9

Sequence 1:NP_650783.2 Gene:Cyp12a4 / 42294 FlyBaseID:FBgn0038681 Length:536 Species:Drosophila melanogaster
Sequence 2:XP_686522.4 Gene:si:ch211-113j14.1 / 558239 ZFINID:ZDB-GENE-120215-110 Length:573 Species:Danio rerio


Alignment Length:585 Identity:158/585 - (27%)
Similarity:263/585 - (44%) Gaps:101/585 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 TLSLATQKRWQTNVATAEAREDSEWLQAKPFEQIPRLNMWALSM-----KMSMPGGKYKNMELME 76
            |.|..|:..:.....:|.||:.|    :.|....|.:||...::     ..:..|.||...:.| 
Zfish    18 THSRKTRPEFDRRHLSASARQSS----SDPLRHTPVVNMLISALVKADRLAAQIGRKYAPFQEM- 77

  Fly    77 MFEAMRQDYGDIFF---------------MPG-----------IMG----------------NPP 99
            :...::...||:..               :||           :.|                .|.
Zfish    78 IARTLKSQTGDVDLQSANTITGRYKTKDDLPGPNLATTVYWLFVKGYADKSHAMQVEHKRLYGPI 142

  Fly   100 FLSTHNPQDFEV-----------VFRNEGVWPNRPGNYTLLYHREEYRKDFYQGVMGVIPTQGKP 153
            :.|...|  |:|           |.|.||.:|.|    |.|.|..||| |......|:....|..
Zfish   143 WRSRFGP--FDVINVAGADLIAQVIRQEGRYPVR----TDLPHWREYR-DMRGQAYGIHVDTGPE 200

  Fly   154 WGDFRTVVNPVLMQPKNVRLYYKKMSQVNQEFVQR--ILELRDPDTLEAPDDFIDTINRWTLESV 216
            |...|:.:||.:::.|.|..|...:.:|..:.:||  :|.||.||.:.. .|....:.::..|.:
Zfish   201 WYRIRSALNPKMLKLKEVTAYAPIIHEVVSDLLQRLELLRLRSPDQITV-SDLASELYKFGFEGI 264

  Fly   217 SVVALDKQLGLLKNSNKESEALKLFHYLDEFFIVSIDLEMKPSPWRYIKTPKLKRLMRALDGIQE 281
            |.:..:.:||.|: ....::.|:....::|...:|..:...|...|:| .|..||.::|.|.:.:
Zfish   265 SSILFETRLGCLQ-EEIPTDTLRFISAVNEMLALSETVLFFPRWTRHI-FPFWKRFVQAWDELYD 327

  Fly   282 VTLAYVDEAIERLDKEAKEGVVRPENEQSVLEKLLKVDRKVAT----VMAMDMLMAGVDTTSSTF 342
            |....:|:.:    .|.::.|.|.|..:.:....|....|::.    :...::|:.||||||:|.
Zfish   328 VARHLIDKKV----NEIRDQVARGEEVEGMYLTYLLSSNKLSLGEVYISLTELLLGGVDTTSNTL 388

  Fly   343 TALLLCLAKNPEKQARLREEVMKVLPNKNSEFTEASMKNVPYLRACIKESQRLHPLIVGNARV-L 406
            :..|..||:|||.|.||..|::.|.|||....|: .:..:||::|.|||..|::|::.||.|: :
Zfish   389 SWTLYHLARNPEIQKRLHNEIVSVCPNKKVPNTD-DLTKMPYMKAVIKEILRMYPVVPGNGRLTV 452

  Fly   407 ARDAVLSGYRVPAGTYVNIVPLNALTRDE-YFPQASEFLPERWLRSPKDSESKCPANELKSTNPF 470
            ..|.|:..|..|..|..::... |::.|| .||.|..|:||||:|   ||.|:      ...:|:
Zfish   453 DSDIVVDNYWFPKKTQFHLCHY-AVSHDENNFPDAERFVPERWIR---DSPSR------SQHHPY 507

  Fly   471 VFLPFGFGPRMCVGKRIVEMELELGTARLIRNFNV--EFNYPT-ENAFRSALINLPNIPLKFKFI 532
            ..:|||.|.|.|||||:.|:|:....:||::.:.|  :...|: :...|:.||  |:.|:..:||
Zfish   508 SSVPFGVGVRACVGKRVAELEMYFALSRLMQQYEVRTKAGSPSIQPKTRTLLI--PSQPIDLQFI 570

  Fly   533  532
            Zfish   571  570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp12a4NP_650783.2 p450 72..531 CDD:299894 142/522 (27%)
si:ch211-113j14.1XP_686522.4 p450 108..569 CDD:278495 139/487 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 217 1.000 Domainoid score I2609
eggNOG 1 0.900 - - E2759_KOG0159
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 219 1.000 Inparanoid score I3547
OMA 1 1.010 - - QHG48087
OrthoDB 1 1.010 - - D185685at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6352
orthoMCL 1 0.900 - - OOG6_100895
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X156
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.780

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