DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cyp12a4 and npp-24

DIOPT Version :9

Sequence 1:NP_650783.2 Gene:Cyp12a4 / 42294 FlyBaseID:FBgn0038681 Length:536 Species:Drosophila melanogaster
Sequence 2:NP_001379685.1 Gene:npp-24 / 3564830 WormBaseID:WBGene00022672 Length:655 Species:Caenorhabditis elegans


Alignment Length:427 Identity:80/427 - (18%)
Similarity:139/427 - (32%) Gaps:143/427 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 FLSTHNPQDFEVVFRNEG--------VWPNRPGNYTLLYHREEYRKDFYQGVMGVIPTQGK---- 152
            ::.|.||:...|.....|        |:||..|.:..|. :::.|.....|...::..|.:    
 Worm   255 YIQTTNPRICSVFVLVSGGGVLSHLVVFPNEFGEFRFLV-KDQLRLPSSNGDPRIVQNQIRSLKV 318

  Fly   153 -----------------PWGDFRTVVNPVLMQPKNVRLYYKKMSQVNQEFVQRILELRDPDTLEA 200
                             ||.:..|.::|.....|..|:         .|.|..::          
 Worm   319 SRYEIATSSSLFSVNIFPWFEALTSISPTSTLEKETRV---------SELVDAVI---------- 364

  Fly   201 PDDFIDTINRWT----LESVSV-----VALDKQ---------LGLLKNSNKESEALKLFHYLDEF 247
            |.|.:....:||    |.:|||     :|.:::         :.|:...||:.:...||:     
 Worm   365 PSDELSNTTKWTGARALRAVSVQLTQSLATEEEELLPESENIMHLVILENKDGQPAHLFN----- 424

  Fly   248 FIVSID----LEMKPS---------PWRYIKTPKLKRLMRALDGIQ--------------EVTLA 285
             |.:.|    .|.|.|         |.:  .|..|::.:.||..:.              :..:.
 Worm   425 -ISTFDNIWSTENKTSFGRDSVSQPPMK--STGSLEQQLAALKPLAACVISEKVSCEEAIDAAMK 486

  Fly   286 YVDEAIERLDKEAKEGVVRPENEQSVLEKLLKVDRKVATVMAMDMLMAGVDTTSSTFTALLLCLA 350
            :.|...|||.|..       |..:..:|:.|.|.   ::..|:|.....||              
 Worm   487 FFDAVDERLKKHC-------EISKLFVERCLAVS---SSAQALDEKQQSVD-------------- 527

  Fly   351 KNPEKQARLREEV-----MKVLPNKNSEFTEASMKNVPYLRACIKESQRLHPLIVGNARVLARDA 410
                  .||.||.     :|:..::..|..|.:.|.:..|...:.|:.   ||.....|:..|  
 Worm   528 ------QRLIEETNTVEELKIRMHETKERMEGARKGINVLFHRVDENV---PLSDNEIRIFER-- 581

  Fly   411 VLSGYRVPAGTYVNIVPLNALTRDEYFPQASEFLPER 447
             |..::........:||...|..:|....|:..|.:|
 Worm   582 -LKEHQKMLSDMTKLVPKMTLDSNEIHRMANIVLKKR 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp12a4NP_650783.2 p450 72..531 CDD:299894 80/427 (19%)
npp-24NP_001379685.1 Nup88 26..>212 CDD:401976
Smc <455..>653 CDD:224117 38/199 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0159
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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