DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cyp12a4 and cyp26c1

DIOPT Version :9

Sequence 1:NP_650783.2 Gene:Cyp12a4 / 42294 FlyBaseID:FBgn0038681 Length:536 Species:Drosophila melanogaster
Sequence 2:XP_031761583.1 Gene:cyp26c1 / 100489980 XenbaseID:XB-GENE-1219115 Length:608 Species:Xenopus tropicalis


Alignment Length:693 Identity:128/693 - (18%)
Similarity:219/693 - (31%) Gaps:285/693 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SALSLIQSQKATLSLATQKRWQTNVATAEAREDSEWLQAKPFEQIPRLNM-WAL---SMKMSMPG 66
            |||||:     .|..|:.:.|.....:...|..|        ..:|:.:| |..   ::...:.|
 Frog    18 SALSLV-----LLLAASHQLWSLRWHSTRDRGSS--------LPLPKGSMGWPFFGETLHWLVQG 69

  Fly    67 GKYKNMELMEMFEAMRQDYGDIF--FMPG---------------IMGNPPFLSTHNPQDFEVVFR 114
            ..:.:        :.|:.||:||  .:.|               ::|....:||..||..:::. 
 Frog    70 SSFHS--------SRREKYGNIFKTHLLGKPVIRVTGAENIRKILLGEHHLVSTQWPQSTQIIL- 125

  Fly   115 NEGVWPNRPGNYTLL-----YHREEYRKDFYQGVMGVIPTQGKPWGDFRTVVNPVLMQPKNVRLY 174
                     |:.||.     .||::                       |.:::.||         
 Frog   126 ---------GSNTLSNSIGELHRQK-----------------------RKMMSKVL--------- 149

  Fly   175 YKKMSQVNQEFVQRILELRDPDTLEAPDDFIDTINRWTLES-------VSVVALDKQ-------- 224
               .|...:.::.||.|                ..||.:.|       ||:::..|.        
 Frog   150 ---SSAALESYLPRIHE----------------AVRWEVRSWCRGVGPVSMLSCAKALTFRIAAR 195

  Fly   225 --LGLLKNSNKESEALKLFHYL-DEFFIVSIDLEMKPSPWRYIKTPKLKRLMRALDGIQEVTLAY 286
              |||.....:..|..:.|..| :..|.:.:|:...          .|::.|:|.|.:.:    |
 Frog   196 ILLGLSLTDTQFQELTRTFEQLVENLFCLPLDIPFS----------GLRKGMKARDTLHQ----Y 246

  Fly   287 VDEAI-ERLDK---------------EAKEGVVRPENEQSVLEKLLKVDRKVATVMAMDMLMAGV 335
            ::||| |:|.|               .|||| .:..|.|.:.|.            |::::.|..
 Frog   247 MEEAIKEKLSKRDPDACEDALDYLINSAKEG-GKEINMQELKES------------AIELIFAAF 298

  Fly   336 DTTSSTFTALLLCLAKNPEKQARLREEV------------------------------------- 363
            .||:|..|:|:|.|.|:|....::|:|:                                     
 Frog   299 LTTASASTSLVLLLLKHPSAIHKIRQELASHGLSEHCEQCLPATENPNNNILQDNGHQCLTAGCQ 363

  Fly   364 -----------------------------------MKVLPNKNSEFTEA---------------- 377
                                               .|.|.|..:...||                
 Frog   364 LPLVMGTEGQVKTLWEQTKQLLTDRTDQDPQNSLSSKNLVNGENRIQEAPCSHDKSNCSPVPGKL 428

  Fly   378 ----------------SMKNVPYLRACIKESQRLHPLIVGNARVLARDAVLSGYRVPAGTYVNIV 426
                            .:|::.||...:||..||.|.:.|..|...:...|.||::|.|..|...
 Frog   429 QNSVFEGTCQQNISLEKLKSLHYLDCVVKEVLRLLPPVSGGYRTALQTFELDGYQIPKGWSVMYS 493

  Fly   427 PLNALTRDEYFPQASEFLPERWLRSPKDSESKCPANELKSTNPFVFLPFGFGPRMCVGKRIVEME 491
            ..:.......:..|..|.|||:  |.:..|.|        ...|.::|||.|.|.|:||.:.::.
 Frog   494 IRDTHETAAVYQNAEMFDPERF--STERDEGK--------LGRFNYIPFGGGARSCIGKELAQII 548

  Fly   492 LELGTARLIRNFNVEFNYPTENAFRSALINLP--NIPLKFKFI 532
            |::....|:.....|...|:....::..:..|  .:.|.|.|:
 Frog   549 LKILAMELVTTAKWELATPSFPKMQTVPVVHPVDGLQLSFSFL 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp12a4NP_650783.2 p450 72..531 CDD:299894 113/620 (18%)
cyp26c1XP_031761583.1 cytochrome_P450 59..588 CDD:425388 113/634 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D574756at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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