DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mRpL55 and Mrpl55

DIOPT Version :10

Sequence 1:NP_650780.1 Gene:mRpL55 / 42290 FlyBaseID:FBgn0038678 Length:107 Species:Drosophila melanogaster
Sequence 2:NP_001099252.1 Gene:Mrpl55 / 287356 RGDID:1308161 Length:127 Species:Rattus norvegicus


Alignment Length:87 Identity:40/87 - (45%)
Similarity:60/87 - (68%) Gaps:2/87 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 AVTRLHRSVYCRLYPTVVVQPDGSTINIRYHEPRKIIKLPLDLSTLTDAERRARLEARKPRKKVK 86
            ::|||.|..|.||||.::|:.|||||:|||.|||:::.:||||..|:..|||||...|:.:.:.|
  Rat    38 SLTRLRRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPLDLDALSPEERRARFRKREAQLQQK 102

  Fly    87 IMEEVE--DNFNAKKYMKYIKK 106
            ..||.|  |:|:.::|.::..|
  Rat   103 REEEPEMVDSFDTERYKRFWTK 124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL55NP_650780.1 Mitoc_L55 <18..96 CDD:462893 37/75 (49%)
Mrpl55NP_001099252.1 Mitoc_L55 10..124 CDD:462893 39/85 (46%)

Return to query results.
Submit another query.