DRSC/TRiP Functional Genomics Resources

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Protein Alignment cdi and limk1a

DIOPT Version :10

Sequence 1:NP_524401.2 Gene:cdi / 42289 FlyBaseID:FBgn0004876 Length:1213 Species:Drosophila melanogaster
Sequence 2:NP_001036156.1 Gene:limk1a / 735292 ZFINID:ZDB-GENE-061212-3 Length:648 Species:Danio rerio


Alignment Length:487 Identity:151/487 - (31%)
Similarity:221/487 - (45%) Gaps:117/487 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSLNQHSGPG--PPSEICGLSVDQVDSSAASPFIWPSTAGMCTTATTVTTSTN-GDATAE---AP 59
            :|::|.|.|.  .|.....:.|.||.....||              .|..|.: ||...|   .|
Zfish   179 VSIDQASSPNGYSPEHKRTVRVSQVYPDCISP--------------DVKNSIHVGDRILEINGTP 229

  Fly    60 VKHQPLH-------------------------------NGGWIGNGLPPAPVTRTISSD------ 87
            :::.||.                               :||...:| .|:|:||..|.|      
Zfish   230 IQNVPLDEIDLLIQETSRLLQLTIEHDPHDQGPSVDHVDGGPSPSG-GPSPITRPPSQDISNLRS 293

  Fly    88 RLVTGS--------------------------SCRALRTAVSALYSVDDFVK-EKIGSGFFSEVY 125
            |::|.|                          |.|.:......::...|.:. |.:|:|.|.:..
Zfish   294 RIITRSYSIDKSPSSSSAPSPLSLRKDIGRSESLRGVSNRTHRIFRASDLIHGEVLGTGCFGQAI 358

  Fly   126 KVTHRTTGQVMVLKMNQL----RANRPNMLREVQLLNKLSHANILSFMGVCVQEGQLHALTEYIN 186
            |||||.||:|||:|  :|    ...:...|:||:::..|.|.|:|.|:||..::.:|:.:.|||.
Zfish   359 KVTHRETGEVMVMK--ELIRFDEETQRTFLKEVKVMRCLDHPNVLKFIGVLYKDKRLNFIAEYIK 421

  Fly   187 GGSLEQLLANKEVVLSATQKIRLALGIARGMSYVHDAGIFHRDLTSKNVLIRNLANDQYEAVVGD 251
            ||:|..::.|.:......|::..|..||.||:|:|...|.||||.|.|.|:|    :....||.|
Zfish   422 GGTLRDIIKNMDSNYPWGQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVR----ENKSVVVAD 482

  Fly   252 FGLAAKIPVK---------SRKSRLETVGSPYWVSPECLKGQWYDQTSDVFSFGIIQCEIIARIE 307
            ||| :::.|:         .|:.|...||:|||::||.:.|:.||:..|:|||||:.||||.|:.
Zfish   483 FGL-SRLMVEDRSVERRKADRRKRYTVVGNPYWMAPEMIHGKSYDEKVDLFSFGIMLCEIIGRVN 546

  Fly   308 ADPDMMPRTASFGLDYLAFV-ELCPMDTPPVFLRLAFYCCLYDAKSRPTFHDATKKLTLLLEKYE 371
            ||||.:||...|||:...|: |.||.|.|..|..:|..||..||:.||.|    .||...||..:
Zfish   547 ADPDYLPRALDFGLNTAVFLEEHCPADCPAAFFPIAALCCDLDAEKRPAF----TKLESWLEDLK 607

  Fly   372 HESSAGASPLSSLELI-------NCSPGGSDS 396
            .....|...:|.|||:       :.|.||.:|
Zfish   608 MHLELGLHLVSELELLHQDFMQKHTSGGGKNS 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdiNP_524401.2 Protein Kinases, catalytic domain 116..370 CDD:473864 108/267 (40%)
limk1aNP_001036156.1 LIM1_LIMK1 5..79 CDD:188846
LIM 86..140 CDD:413332
PDZ_LIMK-like 159..257 CDD:467236 18/91 (20%)
STKc_LIMK1 349..610 CDD:271123 108/271 (40%)
Blue background indicates that the domain is not in the aligned region.

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