DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cdi and LIMK1

DIOPT Version :9

Sequence 1:NP_524401.2 Gene:cdi / 42289 FlyBaseID:FBgn0004876 Length:1213 Species:Drosophila melanogaster
Sequence 2:NP_511139.2 Gene:LIMK1 / 32207 FlyBaseID:FBgn0283712 Length:1257 Species:Drosophila melanogaster


Alignment Length:1031 Identity:265/1031 - (25%)
Similarity:379/1031 - (36%) Gaps:312/1031 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 PSEICGLSVDQVD---SSAASPFIWPSTAGMCTTATTVTT------STNGDATAEAPVKHQPLHN 67
            |.::| .|..|.|   :.:||..|.|    :.|:|::|..      .|.|    |...|.:.|..
  Fly   274 PVQVC-RSCSQADIQRAMSASTLILP----LSTSASSVEVGRERLYKTPG----EQGTKARKLRQ 329

  Fly    68 GGWIGNGLPPA----PVTRTISSDR-------------------------LVTGSSCRALRTAVS 103
            .......:|||    .:|:....:|                         |....|||.::....
  Fly   330 ATNASTTIPPAAGATAMTQLKEKERCSSLSKLLDEQHQAQQHSAHPQLYDLSRTQSCRVVQKPQR 394

  Fly   104 ALYSVDDFVKEKIGSGFFSEVYKVTHRTTGQVMVLKMNQL-RAN---RPNMLREVQLLNKLSHAN 164
            ...:.|..:.||:|.|||.:|:|||||.:|:|||||  :| ||:   :.|.::||.:|..|.|.:
  Fly   395 IFRATDLVIGEKLGEGFFGKVFKVTHRQSGEVMVLK--ELHRADEEAQRNFIKEVAVLRLLDHRH 457

  Fly   165 ILSFMGVCVQEGQLHALTEYINGGSLEQLLANKEVVLSATQKIRLALGIARGMSYVHDAGIFHRD 229
            :|.|:||..::.:||.:|||:.||.|::|:.:...||...|::|||..||.||||:|...|.|||
  Fly   458 VLKFIGVLYKDKKLHMVTEYVAGGCLKELIHDPAQVLPWPQRVRLARDIACGMSYLHSMNIIHRD 522

  Fly   230 LTSKNVLIRNLANDQYEAVVGDFGLAAKIPV---------------------------------- 260
            |.|.|.|:|    :....:|.|||||..:..                                  
  Fly   523 LNSMNCLVR----EDRSVIVADFGLARSVDAPRLPSGNMTPGGYGSGANSDAPMSPSGTLRRSKS 583

  Fly   261 KSRKSRLETVGSPYWVSPECLKGQWYDQTSDVFSFGIIQCEIIARIEADPDMMPRTASFGLDYLA 325
            :.|:.|...||:|||::||.:||..||:..|||||||:.||||.|:|||||.|||.:.|.|:...
  Fly   584 RQRRQRYTVVGNPYWMAPEMMKGLKYDEKVDVFSFGIMLCEIIGRVEADPDFMPRNSDFSLNQQE 648

  Fly   326 FVELCPMDTPPVFLRLAFYCCLYDAKSRPTFHDATKKLTLLL----------EKYEHE------- 373
            |.|......|..|:::||.||..:...||.|......|..|.          |:..||       
  Fly   649 FREKFCAQCPEPFVKVAFVCCDLNPDMRPCFETLHVWLQRLADDLAADRVPPERLLHEIETFQEW 713

  Fly   374 ---SSAGASPLSSLELIN------------CSPGGSDSENVTLTPRASVPTVATICT--APAG-- 419
               |....||.|...|.|            .||...:.||:.:.|: .:|....:..  :|:|  
  Fly   714 YASSEDALSPTSQRSLNNLDELVKSAVDSEISPVEKEKENMVIKPQ-DIPKSPHLGKDFSPSGER 777

  Fly   420 ---TLTPRHLQEV----DEDGFRFPSKKSASAALPGT-----PNGSAG----------------- 455
               ::..|..|..    :|.....|..:|...||...     |.|..|                 
  Fly   778 LRDSMRARRRQRFLGAQEERRNLTPDTESKERALKKALKKCRPFGERGYLVDLRAGAELQLEDVR 842

  Fly   456 --------SSGFDDHILKSRVRR--ATQKLEAEILLHRRSLSENIIHFPM------HTSPSDKAR 504
                    .|..|..:....|..  |.|:.|..:...:..|.|...:.|.      |....|..|
  Fly   843 DLNTYSDVDSSCDTSLNYHDVNNLPAAQEDENTVKPGKEELLEESTNKPSNQESQHHRLAIDDMR 907

  Fly   505 -----C-----HQMQRQR----SSTHS-----PTPPRQLSSVQL---------PATSIPDPPPLP 541
                 |     |..:..|    .|.||     .|||..|...|.         ...:.|.|||..
  Fly   908 TRLNQCRSKFEHLEEASRRNFNQSQHSMKNFFKTPPVALKMFQRLEHEAAALNGGNNCPPPPPRT 972

  Fly   542 KPV----------PAVLTLRKVGDPQYKPTSEKDHNGSKPNPFEALAQL--RGVKKILDANP--- 591
            :.:          |.|..:                 |.|....|:|..|  .||.|.| |.|   
  Fly   973 QRINQTPIFGRKNPPVAIV-----------------GQKLQHAESLEDLASSGVAKQL-ATPAPK 1019

  Fly   592 --KTYAAGVGDLFSSCFEMLAPFFKELAAMQSKAGAQGGGTSTEETSTGNKASAATPSEPKSLPV 654
              |..|...|...|:....|.|......|:.|....         |:|.|..|:..||....|| 
  Fly  1020 RSKATATTKGGQSSNPPLFLPPSLNISVALNSNGNV---------TTTTNTNSSCPPSASDWLP- 1074

  Fly   655 SPHMTRKYSAIELRLPQRISNAAPPAVTSAPPPSIALPTDEDDCDDCNSEGED----PDGGG--- 712
                 :|:   :|.||      .|.|.......:..||.       ||::|:.    |...|   
  Fly  1075 -----KKH---KLTLP------LPSAQQQRTSSNHRLPM-------CNNKGKTLKPLPSRTGSQG 1118

  Fly   713 ----NCADAESSSDDSAVRPSTVPTARKYRANSLYAHPLFRGSNGTSMKSTSTGEFESPTLLKAS 773
                ||.....||     ||.: ||          .|...|.:..|:.:.|:..........:.|
  Fly  1119 IPASNCVSPTRSS-----RPGS-PT----------KHLAQRHTAATAQRLTNAAATHQQQHQQQS 1167

  Fly   774 ASTITLTA-------SVGATNSCEDLTESARKSKEQASSGATAAVQALPTPMSGCS 822
            :.|..|..       .:||.     ||:..:|.:|:|::.|::...|      ||:
  Fly  1168 SKTTRLNILSPEKVHRLGAR-----LTDQKQKMREEAAATASSVGGA------GCA 1212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdiNP_524401.2 TyrKc 113..363 CDD:197581 114/287 (40%)
PKc_like 116..370 CDD:304357 115/301 (38%)
LIMK1NP_511139.2 LIM1_LIMK 33..88 CDD:188750
LIM2_LIMK 95..148 CDD:188751
PDZ_signaling 172..271 CDD:238492
STKc_LIMK 407..693 CDD:271056 114/291 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445224
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D119463at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR46485
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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