DRSC/TRiP Functional Genomics Resources

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Protein Alignment cdi and Limk2

DIOPT Version :9

Sequence 1:NP_524401.2 Gene:cdi / 42289 FlyBaseID:FBgn0004876 Length:1213 Species:Drosophila melanogaster
Sequence 2:XP_030101468.1 Gene:Limk2 / 16886 MGIID:1197517 Length:702 Species:Mus musculus


Alignment Length:382 Identity:138/382 - (36%)
Similarity:196/382 - (51%) Gaps:45/382 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 VDQVDSSAASPFIWPSTAGMCTTATTVTTSTNGDATAEAPVKHQPLHNGGWIGNGL-PPAPVTRT 83
            :||:...|..|....|| |.....:|:.|..|.:.|    ::.:.|.....|.... |.:|....
Mouse   302 LDQLRLDARLPPHMQST-GHTLMLSTLDTKENQEGT----LRRRSLRRSNSISKSPGPSSPKEPL 361

  Fly    84 ISSDRLVTGSSCRALRTAVSALYSVDDFVK-EKIGSGFFSEVYK------VTHRTTGQVMVLKMN 141
            :.|..:....|.|...:....::...|.:. |.:|.|||.:..|      |||:.||:|||:| .
Mouse   362 LLSRDISRSESLRCSSSYSQQIFRPCDLIHGEVLGKGFFGQAIKSWEGGQVTHKATGKVMVMK-E 425

  Fly   142 QLRAN---RPNMLREVQLLNKLSHANILSFMGVCVQEGQLHALTEYINGGSLEQLLANKEVVLSA 203
            .:|.:   :...|.||:::..|.|.|:|.|:||..::.:|:.|||||.||:|:..|.:.: ....
Mouse   426 LIRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLRSVD-PFPW 489

  Fly   204 TQKIRLALGIARGMSYVHDAGIFHRDLTSKNVLIRNLANDQYEAVVGDFGLAAKI-------PVK 261
            .||:|.|.||:.||:|:|...|.||||.|.|.||:.    ....||.||||:..|       ||:
Mouse   490 QQKVRFAKGISSGMAYLHSMCIIHRDLNSHNCLIKL----DKTVVVADFGLSRLIVEERKRPPVE 550

  Fly   262 ------------SRKSRLETVGSPYWVSPECLKGQWYDQTSDVFSFGIIQCEIIARIEADPDMMP 314
                        .||.|...||:|||::||.|.|:.||:|.|||||||:.||||.::.||||.:|
Mouse   551 KATTKKRTLRKSDRKKRYTVVGNPYWMAPEMLNGKSYDETVDVFSFGIVLCEIIGQVYADPDCLP 615

  Fly   315 RTASFGLDYLAFVE-LCPMDTPPVFLRLAFYCCLYDAKSRPTF---HDATKKLTLLL 367
            ||..|||:...|.| ..|.|.||.|..||..||..:.:|||.|   .|:.:.|:|.|
Mouse   616 RTLDFGLNVKLFWEKFVPTDCPPAFFPLAAICCKLEPESRPAFSKLEDSFEALSLFL 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdiNP_524401.2 TyrKc 113..363 CDD:197581 116/282 (41%)
PKc_like 116..370 CDD:304357 118/284 (42%)
Limk2XP_030101468.1 LIM 70..123 CDD:351770
LIM2_LIMK2 125..183 CDD:188849
PDZ 210..294 CDD:366185
STKc_LIMK2 395..672 CDD:271124 117/282 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D119463at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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