DRSC/TRiP Functional Genomics Resources

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Protein Alignment cdi and Limk2

DIOPT Version :10

Sequence 1:NP_524401.2 Gene:cdi / 42289 FlyBaseID:FBgn0004876 Length:1213 Species:Drosophila melanogaster
Sequence 2:XP_030101468.1 Gene:Limk2 / 16886 MGIID:1197517 Length:702 Species:Mus musculus


Alignment Length:382 Identity:138/382 - (36%)
Similarity:196/382 - (51%) Gaps:45/382 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 VDQVDSSAASPFIWPSTAGMCTTATTVTTSTNGDATAEAPVKHQPLHNGGWIGNGL-PPAPVTRT 83
            :||:...|..|....|| |.....:|:.|..|.:.|    ::.:.|.....|.... |.:|....
Mouse   302 LDQLRLDARLPPHMQST-GHTLMLSTLDTKENQEGT----LRRRSLRRSNSISKSPGPSSPKEPL 361

  Fly    84 ISSDRLVTGSSCRALRTAVSALYSVDDFVK-EKIGSGFFSEVYK------VTHRTTGQVMVLKMN 141
            :.|..:....|.|...:....::...|.:. |.:|.|||.:..|      |||:.||:|||:| .
Mouse   362 LLSRDISRSESLRCSSSYSQQIFRPCDLIHGEVLGKGFFGQAIKSWEGGQVTHKATGKVMVMK-E 425

  Fly   142 QLRAN---RPNMLREVQLLNKLSHANILSFMGVCVQEGQLHALTEYINGGSLEQLLANKEVVLSA 203
            .:|.:   :...|.||:::..|.|.|:|.|:||..::.:|:.|||||.||:|:..|.:.: ....
Mouse   426 LIRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLRSVD-PFPW 489

  Fly   204 TQKIRLALGIARGMSYVHDAGIFHRDLTSKNVLIRNLANDQYEAVVGDFGLAAKI-------PVK 261
            .||:|.|.||:.||:|:|...|.||||.|.|.||:.    ....||.||||:..|       ||:
Mouse   490 QQKVRFAKGISSGMAYLHSMCIIHRDLNSHNCLIKL----DKTVVVADFGLSRLIVEERKRPPVE 550

  Fly   262 ------------SRKSRLETVGSPYWVSPECLKGQWYDQTSDVFSFGIIQCEIIARIEADPDMMP 314
                        .||.|...||:|||::||.|.|:.||:|.|||||||:.||||.::.||||.:|
Mouse   551 KATTKKRTLRKSDRKKRYTVVGNPYWMAPEMLNGKSYDETVDVFSFGIVLCEIIGQVYADPDCLP 615

  Fly   315 RTASFGLDYLAFVE-LCPMDTPPVFLRLAFYCCLYDAKSRPTF---HDATKKLTLLL 367
            ||..|||:...|.| ..|.|.||.|..||..||..:.:|||.|   .|:.:.|:|.|
Mouse   616 RTLDFGLNVKLFWEKFVPTDCPPAFFPLAAICCKLEPESRPAFSKLEDSFEALSLFL 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdiNP_524401.2 Protein Kinases, catalytic domain 116..370 CDD:473864 118/284 (42%)
Limk2XP_030101468.1 LIM 70..123 CDD:413332
LIM2_LIMK2 125..183 CDD:188849
PDZ_LIMK-like 205..297 CDD:467236
STKc_LIMK2 395..672 CDD:271124 117/282 (41%)
Blue background indicates that the domain is not in the aligned region.

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