DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cdi and limk2

DIOPT Version :10

Sequence 1:NP_524401.2 Gene:cdi / 42289 FlyBaseID:FBgn0004876 Length:1213 Species:Drosophila melanogaster
Sequence 2:NP_001135686.1 Gene:limk2 / 100216249 XenbaseID:XB-GENE-976145 Length:606 Species:Xenopus tropicalis


Alignment Length:427 Identity:145/427 - (33%)
Similarity:198/427 - (46%) Gaps:92/427 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 EICGLSVDQVDSSAASPFIWPSTAGMCTTATTVTTSTNGDATAEAPVKHQPLHNGGWIGNGLPPA 78
            ||.|..|..:.|..|...       :|:|          |.|.:..::|.|..|.. :.|..|.:
 Frog   183 EINGSPVTTLSSKEADDL-------LCST----------DRTLQLLIEHNPPPNLP-VDNAPPKS 229

  Fly    79 PVTRTI------------------SSDRLVTGSSC----------RALRTAVSALYSV----DDF 111
            |..|:|                  :|:....|:.|          .:||..|.....:    :..
 Frog   230 PSFRSIEARGSTEGPMKRSSIRRSNSNTRSPGTCCPKDPRSVSRSESLRCGVGGAQQIFRPCELL 294

  Fly   112 VKEKIGSGFFSEVYKVTHRTTGQVMVLK-MNQL-RANRPNMLREVQLLNKLSHANILSFMGVCVQ 174
            ..|::|.|||....|||||.||:|||:| :.|. ...:.|.|.||:::..|.|.|:|.|:||..:
 Frog   295 HGEELGKGFFGRAIKVTHRATGRVMVMKELIQFDEQTQKNFLTEVKVMRSLDHPNVLRFIGVLYK 359

  Fly   175 EGQLHALTEYINGGSLEQLLANKEVVLSATQKIRLALGIARGMSYVHDAGIFHRDLTSKNVLIRN 239
            :|:|:.|||:|..|:|:..|  :.......||:..|..||.||:|:|...|.||||.|.|.||:.
 Frog   360 DGRLNLLTEFIECGTLKDYL--RADYCPWQQKVSFAKDIACGMAYLHSMSIIHRDLNSHNCLIKL 422

  Fly   240 LANDQYEAVVGDFGLAAKI------------PVK-------SRKSRLETVGSPYWVSPECLKGQW 285
                ....||.||||:..|            |.|       :||.|...||:|||::||.|.|:.
 Frog   423 ----DGTTVVADFGLSRLIVEEKPLPAPDRPPTKKRTLRKNNRKKRYTVVGNPYWMAPEMLNGKD 483

  Fly   286 YDQTSDVFSFGIIQCEIIARIEADPDMMPRTASFGLDYLAFVE-LCPMDTPPVFLRLAFYCCLYD 349
            ||:..|:|||||:.||||.::.||||.:|||..|||:...|.| ..|.|.||.|..||..||..:
 Frog   484 YDEKVDIFSFGIVLCEIIGQVYADPDCLPRTLDFGLNVRLFWEKFVPKDCPPGFFPLATSCCHLE 548

  Fly   350 AKSRPTF---HDATKKLTLL-----------LEKYEH 372
            ...||.|   |||...|:|.           ||..||
 Frog   549 PDQRPDFPHLHDALTALSLFVGELGIPLPSELEYMEH 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdiNP_524401.2 Protein Kinases, catalytic domain 116..370 CDD:473864 118/289 (41%)
limk2NP_001135686.1 LIM2_LIMK 62..115 CDD:188751
PDZ_canonical 137..216 CDD:483948 11/49 (22%)
STKc_LIMK2 299..568 CDD:271124 115/274 (42%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.