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Protein Alignment CG6026 and Hcn4

DIOPT Version :10

Sequence 1:	NP_650778.2	Gene:	CG6026 / 42287	FlyBaseID:	FBgn0038676	Length:	1555	Species:	Drosophila melanogaster
Sequence 2:	NP_067690.1	Gene:	Hcn4 / 59266	RGDID:	71065	Length:	1198	Species:	Rattus norvegicus

Alignment Length:	566	Identity:	124/566 - (21%)
Similarity:	173/566 - (30%)	Gaps:	201/566 - (35%)

- Green bases have known domain annotations that are detailed below.

  Fly   578 NE--QKVISGSQENYSNEYVSYQVQQPNMMQYRPVPGQINNVVISPGQQSASFVLGSQVQQVSVG 640
            ||  |:::...:|   ..:.:::||........|.|.....::.:|.|.:|:   .:.|......
  Rat   739 NEIIQQIVRHDRE---MAHCAHRVQAAASATPTPTPVIWTPLIQAPLQAAAA---TTSVAIALTH 797

  Fly   641 HPSIEKEPLFAKDTPGVQYGQVINEDIGNI--------KRPLKEPLP------PPPNFQQMPSIQ 691
            ||.:..........||          :||:        .|.|:..:|      .|.:........
  Rat   798 HPRLPAAIFRPPPGPG----------LGNLGAGQTPRHPRRLQSLIPSALGSASPASSPSQVDTP 852

  Fly   692 QNSNFHQNGNVATSGAPG------TISYQEPP-----PEAPTPYQQL-----------PLIGSNK 734
            .:|:||.......|..||      :.|...||     |.||||....           ..:|.:.
  Rat   853 SSSSFHIQQLAGFSAPPGLSPLLPSSSSSPPPGACSSPPAPTPSTSTAATTTGFGHFHKALGGSL 917

  Fly   735 RPSKKPVTKPEQPSHSYPPQQSSTPQKPQPTPPVLMQGEDTKELLVSTNIRFP-AQG-----EES 793
            ..|..|:..|.||.       :.:||..||.||:                  | |:|     |..
  Rat   918 SSSDSPLLTPLQPG-------ARSPQAAQPPPPL------------------PGARGGLGLLEHF 957

  Fly   794 LEPPSSAVMQGPPAGPNINGHAQPLSLQQIQNSNPVVFPKPMDEVVPGSASVQIQQHEVLNLSQQ 858
            |.||.|:  :.|.:.|...|                   :|..|:.||.|:
  Rat   958 LPPPPSS--RSPSSSPGQLG-------------------QPPGELSPGLAA-------------- 987

  Fly   859 KQPLKFPAQQPGEQPSLEMEPPPRYPTTV--------PVAHAPPTPGKRPLGTSPPSNFYNEYNR 915
                       |...:.|..|.|..|:.:        |||..|..      |.|||.
  Rat   988 -----------GPPSTPETPPRPERPSFMAGASGGASPVAFTPRG------GLSPPG-------- 1027

  Fly   916 KPQNGPRPSNLPNILPQFRPNAKISSGH---PPALKQEPGNIRLPQQGGPGPKRPYNPAMQPQFA 977
               :.|.|   |...|...|.|..|.|.   |||....|..:  ||:.|..|..|.......:..
  Rat  1028 ---HSPGP---PRTFPSAPPRASGSHGSLLLPPASSPPPPQV--PQRRGTPPLTPGRLTQDLKLI 1084

  Fly   978 HRRQP-LHQQHQQMMQKRYP------MNRISEYP-VGPGPG-----GDVNRRVYRLPPYG---GQ 1026
            ...|| |.|...|.:::..|      |...|.|| .|.|.|     |...|      |||   ||
  Rat  1085 SASQPALPQDGAQTLRRASPHSSGESMAAFSLYPRAGGGSGSSGGLGPPGR------PYGAIPGQ 1143

  Fly  1027 NVPYMPDHMYPRRPQGA---------GPLRSVDGYPAERHAPSSEP 1063
            :|      ..||:....         |...:..|.|....||..||
  Rat  1144 HV------TLPRKTSSGSLPPPLSLFGARAASSGGPPLTAAPQREP 1183

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.