DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6026 and Kcnh3

DIOPT Version :10

Sequence 1:NP_650778.2 Gene:CG6026 / 42287 FlyBaseID:FBgn0038676 Length:1555 Species:Drosophila melanogaster
Sequence 2:XP_006520546.1 Gene:Kcnh3 / 16512 MGIID:1341723 Length:1101 Species:Mus musculus


Alignment Length:427 Identity:90/427 - (21%)
Similarity:134/427 - (31%) Gaps:145/427 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   627 SFVLG-----SQVQQVSVGHPSIEKEPLFAKDTPGVQYGQVINEDIGNIKRPLKEPLPPPPNFQQ 686
            |:.||     ::|...|:...:.....|..|:|.|.| |..::      ..|..||..|      
Mouse   718 SYNLGAGGVSAEVDTSSLSGDNTLMSTLEEKETDGEQ-GHTVS------PAPADEPSSP------ 769

  Fly   687 MPSIQQNSNFHQNGNVATSGAPGTISYQEPPPEAPTPYQQLPLIGSNKRPSKKPVTKPEQPSHSY 751
                     ....|..::|.|...:|.:...|.        |.:|...|||:..|.|||....::
Mouse   770 ---------LLSPGCTSSSSAAKLLSPRRTAPR--------PRLGGRGRPSRAGVLKPEAGPSAH 817

  Fly   752 PPQQSSTPQKPQP--TPPVLMQ----------GEDTKELLVSTNIRFPAQGEESLEPPSSAVMQG 804
            |.........|.|  .||.|..          ..|..:.    :.|....|.|....||.....|
Mouse   818 PRSLDGLQLPPMPWNVPPDLSPRVVDGIEDGCSSDQPKF----SFRVGQSGPECSSSPSPGTESG 878

  Fly   805 ---PPAGPNINGHAQPL-------------------SLQQIQNSNPVVF--------PKPM-DEV 838
               .|.||:...:...|                   .||.::.:..::.        |:.. :|.
Mouse   879 LLTVPLGPSEARNTDTLDKLRQAVMELSEQVLQMREGLQSLRQAVQLILVPQGEGQCPRGSGEEP 943

  Fly   839 VPGSASVQIQQHEVLNLSQQKQPLK---------------------FPAQQPGEQPSLEMEPPPR 882
            .|.:||..:            |||:                     :|..:||:.|.| |.|.|.
Mouse   944 CPATASGLL------------QPLRVDTGASSYCLQPPAGSVLSGTWPHPRPGQPPPL-MAPWPW 995

  Fly   883 YPTTVPVAHAPPTPGKRPLGTS-----PPSNFYNEYNRKPQN--GPRPS------NLPNILPQFR 934
            .|   |.:.:.|.|....|.||     ||.:  .:...:|..  .|.||      ..|..:.|..
Mouse   996 GP---PASQSSPWPRATALWTSTSDSEPPGS--GDLCSEPSTPASPPPSEEGARTGTPAPVSQAE 1055

  Fly   935 PNAKISSGHPP------ALKQEPGNIRLPQQG--GPG 963
            ..   |:|.||      ||..:|.::.:...|  |||
Mouse  1056 AT---STGEPPPGPGGRALPWDPHSLEMVLIGCHGPG 1089

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6026NP_650778.2 PHA03378 <792..975 CDD:223065 52/245 (21%)
Kcnh3XP_006520546.1 PAS_9 40..135 CDD:463873
PLN03192 233..>668 CDD:215625
cyc_nuc_ocin <623..718 CDD:274839 90/427 (21%)
Blue background indicates that the domain is not in the aligned region.

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