DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6026 and Kcnh2

DIOPT Version :10

Sequence 1:NP_650778.2 Gene:CG6026 / 42287 FlyBaseID:FBgn0038676 Length:1555 Species:Drosophila melanogaster
Sequence 2:NP_446401.1 Gene:Kcnh2 / 117018 RGDID:621414 Length:1163 Species:Rattus norvegicus


Alignment Length:430 Identity:97/430 - (22%)
Similarity:141/430 - (32%) Gaps:137/430 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   629 VLGSQVQQVSVGHPSIEKEPLFAKDTPGVQYGQV---INEDIGNIKR-PLKEPLPPPPNFQQ--M 687
            :|...|....:|...|..|||.....||...|.|   ...|:..|.| .|.|.|...|.|..  .
  Rat   791 ILRGDVVVAILGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFW 855

  Fly   688 PSIQQNSNFHQNGNVATSGAPGTISYQEPPPEAPTPYQQLPLIGSNKRPSKKPVTKPEQPSHSYP 752
            .|::...|...     |:..||:.|..|  .|:....|:...:...:|..|    ..|||.    
  Rat   856 SSLEITFNLRD-----TNMIPGSPSSAE--LESGFNRQRKRKLSFRRRTDK----DTEQPG---- 905

  Fly   753 PQQSSTPQKP-----------QPTPPVLMQGEDTKELLVSTNIRFPAQGEESLEPPSSAVMQGP- 805
             :.|:..|.|           ||..|   .||.            |:.|..|   |.|:..:|| 
  Rat   906 -EVSALGQGPARVGPGPSCRGQPGGP---WGES------------PSSGPSS---PESSEDEGPG 951

  Fly   806 -------------PAGPNINGHAQPLSLQQIQNSNPVVFPKPMDEVVPGSASV-------QIQQH 850
                         |..|..:...:||:....::|:..   .|:.....|.:::       :.:|:
  Rat   952 RSSSPLRLVPFSSPRPPGDSPGGEPLTEDGEKSSDTC---NPLSGAFSGVSNIFSFWGDSRGRQY 1013

  Fly   851 EVLNLSQQKQP--LKFPAQQPGEQPSLEMEPP--------------------------PRYPTTV 887
            :.|.......|  |..|...||.:...::|..                          .|..|.|
  Rat  1014 QELPRCPAPAPSLLNIPLSSPGRRSRGDVESRLDALQRQLNRLETRLSADMATVLQLLQRQMTLV 1078

  Fly   888 PVAH-APPTPGKRPLGTSP--PSNFYNEYNRKPQNGPRPS-NLPNI--LPQFRPNAKISSGHPPA 946
            |.|: |..|||..|..|||  |.            ||.|: .|.::  :.||....::.:|.|  
  Rat  1079 PPAYSAVTTPGPGPTSTSPLLPV------------GPVPTLTLDSLSQVSQFVAFEELPAGAP-- 1129

  Fly   947 LKQEPGNIRLPQQGGPGPKRPYNPAMQPQF-AHRRQPLHQ 985
                    .|||.   ||.|  ..::..|. |...||||:
  Rat  1130 --------ELPQD---GPTR--RLSLPGQLGALTSQPLHR 1156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6026NP_650778.2 PHA03378 <792..975 CDD:223065 48/237 (20%)
Kcnh2NP_446401.1 PAS_9 38..130 CDD:463873
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 235..286
Ion_trans 411..670 CDD:459842
Selectivity filter. /evidence=ECO:0000250|UniProtKB:Q63472 626..631
CAP_ED 744..855 CDD:237999 19/63 (30%)
cNMP-binding domain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00060 744..844 16/52 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 873..992 30/150 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1015..1043 6/27 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1126..1163 14/46 (30%)
Blue background indicates that the domain is not in the aligned region.

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