DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prp18 and AT1G03140

DIOPT Version :9

Sequence 1:NP_650776.1 Gene:Prp18 / 42285 FlyBaseID:FBgn0027784 Length:340 Species:Drosophila melanogaster
Sequence 2:NP_563676.1 Gene:AT1G03140 / 839567 AraportID:AT1G03140 Length:420 Species:Arabidopsis thaliana


Alignment Length:392 Identity:126/392 - (32%)
Similarity:187/392 - (47%) Gaps:67/392 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDILKAEIARKRKLLEQRQLVDEK--KKYFRRGDLNAKNTEEVLQKVGYIKQESVEAQGQTTEGA 63
            ||:|:.||.:|||     .|.:|.  ||:|:|.::..|.    :||:...::...|.:.|....|
plant     1 MDLLREEILKKRK-----SLAEESGGKKFFKRSEIEQKK----IQKLREEERREHELKAQRRAAA 56

  Fly    64 YSFVADGQN-------------------------------------ILPRTEVIRRLRERGEPIL 91
            .:...||::                                     ||||.|||||||...:|:.
plant    57 AASGGDGKSSGSAPGSSNAATSASSKSSASDAAAIADSKALTDENLILPRQEVIRRLRFLKQPMT 121

  Fly    92 IFGETEPEAFDRLRQC------EISQPEANRGFRNDFQEAMEQVDAAYLQEMFANTPTTKEDKKS 150
            :|||.:....|||:..      |:.. :...|..|||...:.::.......|..:......|::.
plant   122 LFGEDDQSRLDRLKYVLKEGLFEVDS-DMTEGQTNDFLRDIAELKKRQKSGMMGDRKRKSRDERG 185

  Fly   151 -DFAELDESVSWESIQTMAANMGRNKDY-----------DMDVIITLLTFLLKLWNDQIANYSKH 203
             |..:..|:...|.....::::..:||.           |.|.|:.....||..|..::......
plant   186 RDEGDRGETREDELSGGESSDVDADKDMKRLKANFEDLCDEDKILVFYKKLLIEWKQELDAMENT 250

  Fly   204 EKMSTKVKMTRVIYTQTKEYVKPLFRKLKHHTLPEDILDSLRDICKHLLNRNYITASDAYLEMAI 268
            |:.:.|.|.....:.|...|:.|||...:...||.||..:|..:..|.:.|:|:.|.|.|:::||
plant   251 ERRTAKGKQMVATFKQCARYLVPLFNLCRKKGLPADIRQALMVMVNHCIKRDYLAAMDHYIKLAI 315

  Fly   269 GNAPWPIGVTMVGIHARTGREKIFSKNVAHVMNDETQRKYIQGLKRLMTKCQEYFPTDPSKCVEY 333
            |||||||||||||||.|:.||||::.:|||:|||||.|||:|.:|||||.||..:||.|||.||:
plant   316 GNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEF 380

  Fly   334 VS 335
            .|
plant   381 NS 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp18NP_650776.1 SFM 74..117 CDD:128776 18/48 (38%)
Prp18 186..322 CDD:280929 63/135 (47%)
AT1G03140NP_563676.1 SFM 104..148 CDD:128776 18/44 (41%)
Prp18 232..369 CDD:397123 63/136 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 138 1.000 Domainoid score I1569
eggNOG 1 0.900 - - E1_KOG2808
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2726
Inparanoid 1 1.050 185 1.000 Inparanoid score I1414
OMA 1 1.010 - - QHG54709
OrthoDB 1 1.010 - - D1485522at2759
OrthoFinder 1 1.000 - - FOG0004368
OrthoInspector 1 1.000 - - otm3420
orthoMCL 1 0.900 - - OOG6_102077
Panther 1 1.100 - - LDO PTHR13007
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3091
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

Return to query results.
Submit another query.