DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GatA and HER2

DIOPT Version :9

Sequence 1:NP_650775.2 Gene:GatA / 42283 FlyBaseID:FBgn0260779 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_014021.1 Gene:HER2 / 855338 SGDID:S000004907 Length:464 Species:Saccharomyces cerevisiae


Alignment Length:525 Identity:161/525 - (30%)
Similarity:259/525 - (49%) Gaps:99/525 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRRHLQWSIKQLTASYSDGQLSPRRVTEDALQDALRWKTLNAFVRLTPEQAGQQAQDAEQRYKL- 64
            ::|.|:.||::|::..|                     ..|.|..:.|..           |.: 
Yeast     3 LKRSLKESIERLSSFQS---------------------KYNIFTSINPSP-----------YSIT 35

  Fly    65 --RQPISDLDGVTIAIKDNFCTKDVHTTCASRMLQDFVPPYDATVCSRLKQAGAVILGKTNMDQF 127
              :.....|.|...:||||..|||..|||||.:|::|..|:||||...|||||..||||||:|:|
Yeast    36 NKKGTKETLTGCVASIKDNIVTKDFPTTCASHILENFKSPFDATVVKLLKQAGVHILGKTNLDEF 100

  Fly   128 AMGAGTVDSLYGPTKNIWSEDLNKDHWRIAGGSSGGSASAVAAGLCYAAIGSDTGGSTRNPASYC 192
            .||:|.|.|:.||..|......:|   :|.||||.|:|::||..|...|:|:|||||.|.||.|.
Yeast   101 GMGSGGVHSIRGPVINPLYPHEDK---KIMGGSSSGAAASVACDLVDFALGTDTGGSVRLPACYG 162

  Fly   193 GVVGLKPTYGLVSRHGLIPLVNSMDVPGIFARSVSDCVAVLNTVAGPDKLDSTT----------- 246
            .|:|.||:||.:||.|:|....|:|..||.::.::....|.:|:...|..|.|:           
Yeast   163 SVLGFKPSYGRLSRFGVIAYSQSLDTVGILSKKINVLRKVFHTLDKYDMKDPTSLSVELRELIEG 227

  Fly   247 ---IRQPFTRLHLPEVGQIDLSTVRIGIPKEYH-------CHGLSAEVLETWSKVADLLECSGAS 301
               :|:|                :::||.||:.       .|.|...:||   |:.:|    |..
Yeast   228 NKKVRRP----------------LKVGIVKEFSHESMPIGFHRLYLSLLE---KLINL----GLE 269

  Fly   302 VRQVSLPNTAASIFVYTILNQCEVASNMARYDGIEYGHRATD-ERSTEQLYALSRAEGFNDVVKT 365
            :..||:|:....:.:|..|:..|.|||::|||||.||:|.:: :.....|:|.:|:: |...||.
Yeast   270 IYPVSIPSVKNCLPIYYTLSPAEAASNLSRYDGIRYGYRDSELDIKDGILFAPTRSK-FGTEVKN 333

  Fly   366 RILTGNFLLLKKNYDHYFEKALRVRRLIAEDFARVF-------DSSAKEERVDILLTPTTLTEAP 423
            ||:.||:.|....:.:.|.||.::|..:.::|..:|       :|....:.:|:|:.||:.....
Yeast   334 RIILGNYNLCSDAFKNNFIKAEKLRVNLIDEFDGIFRFPNVLTNSKGNPDGLDLLIVPTSSKLPG 398

  Fly   424 LYKDFASLTNRD--QCAVQDFCTQPANMAGIPAVSIPIRLSQAGLPLSLQLMSNSLNEQLLLTVA 486
            ..:||.....:.  ...:.|..|.|.::||:|::|:|::   ...|:.||::....::.   ||.
Yeast   399 SIRDFEEEEAKSPANSYINDVFTVPMSLAGLPSLSMPLK---EKTPIGLQVVGQYGDDS---TVL 457

  Fly   487 RWIEA 491
            .::|:
Yeast   458 DFVES 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatANP_650775.2 PRK07488 8..491 CDD:236030 158/516 (31%)
gatA 18..490 CDD:234572 154/505 (30%)
HER2NP_014021.1 gatA 1..464 CDD:272925 161/525 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344704
Domainoid 1 1.000 222 1.000 Domainoid score I445
eggNOG 1 0.900 - - E1_COG0154
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6699
Inparanoid 1 1.050 223 1.000 Inparanoid score I763
Isobase 1 0.950 - 0.729574 Normalized mean entropy S1380
OMA 1 1.010 - - QHG60965
OrthoFinder 1 1.000 - - FOG0004263
OrthoInspector 1 1.000 - - oto100307
orthoMCL 1 0.900 - - OOG6_101205
Panther 1 1.100 - - LDO PTHR11895
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R473
SonicParanoid 1 1.000 - - X3001
TreeFam 1 0.960 - -
1615.740

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