DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GatA and Y53F4B.18

DIOPT Version :9

Sequence 1:NP_650775.2 Gene:GatA / 42283 FlyBaseID:FBgn0260779 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_497103.1 Gene:Y53F4B.18 / 190217 WormBaseID:WBGene00013164 Length:535 Species:Caenorhabditis elegans


Alignment Length:542 Identity:119/542 - (21%)
Similarity:200/542 - (36%) Gaps:134/542 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LTASYSDGQLSPRRVTEDALQDALRWK------TLNAFVRLTPEQAGQQAQDAEQ---------- 60
            ::|:.:...:|.:.::..||.::...:      |:||.|....|.|.:||.:.:.          
 Worm    53 ISATQAVQMISQKEISSTALVESYIHRIEQVNNTINAVVVKLFESAREQANEVDSFIALADEDDI 117

  Fly    61 RYKLRQPISDLDGVTIAIKDNFCTKDVHTTCASRMLQDFVPPYDATVCSRLKQAGAVILGKTNMD 125
            :.||.:  ..|.||...:||....::...||.....:.......|....||:.||.::|..||:.
 Worm   118 KKKLEE--KPLYGVPFTMKDALEVENEIITCGVFNRKSTKCDRTAEAIKRLQAAGGILLAITNVP 180

  Fly   126 QFAMGAGTVDSLYGPTKNIWSEDLNKDHWRIAGGSSGGSASAVAAGLCYAAIGSDTGGSTRNPAS 190
            :..|...:|:::||.:||.:      |..|:.||||||..:.:.:|.....:|||.|||.|.||.
 Worm   181 EVCMWVESVNTIYGRSKNPY------DARRMTGGSSGGEGALLGSGGSVIGVGSDIGGSIRMPAF 239

  Fly   191 YCGVVGLKPTYGLVSRHGLIPLVNSMDVP----------GIFARSVSDCVAVLNTVAGPDKLDST 245
            :.||.|||||      .|:|||:..:..|          |...|...|...:|..:|| :...|.
 Worm   240 FNGVFGLKPT------PGVIPLIGHVPEPTGYKTHMLRIGPMCRFAEDLPLMLRIMAG-ENAQSL 297

  Fly   246 TIRQPFTRLHLPEVGQIDLSTVRIGIPKEYHCHGLSAEVLETWSKVADLLECSGASVRQVSLPNT 310
            .:.:|                                              .||..:|...:...
 Worm   298 NLHEP----------------------------------------------VSGKKLRVFYMEGI 316

  Fly   311 AASIFVYTILNQCEVASNMA------RYDGIEYGHRATDERSTEQLYALSRAEGFNDVVKTRIL- 368
            ..|..:..:.::...|...|      :||.:..|......:...:.:.||..|...|....::: 
 Worm   317 TGSPIIQPLEDEMRYALKKAVRFLERKYDIVAQGIELPSAKHAMEFFTLSMHEDTTDPAFNKLML 381

  Fly   369 ------------TGNFLLLKKNYDHYFEKALRVRRLIAEDFARVFDSS-------------AKEE 408
                        |..|..:..|.:|          .::...|.:.||.             .|.:
 Worm   382 CTKGTKGEVNCFTEIFKYMAGNSNH----------TLSGIVAGIIDSRDPPFSEAHTKNLLYKRD 436

  Fly   409 R----VDILLTPTTLTEAPLYKDFASLTNRDQCAVQDFC-TQPANMAGIPAVSIPIRLSQAGLPL 468
            |    |..||....:...|.:...|...|....|..:|| |...|:..:|.|..|:.|...||||
 Worm   437 RLKRQVKELLGTDGILLFPSWPCTAMYHNEPILAPFNFCYTALWNVLSVPVVQCPLGLDSRGLPL 501

  Fly   469 SLQLMSNSLNEQLLLTVARWIE 490
            .:|::.|...::.|:.:|:.:|
 Worm   502 GVQVIGNQYTDRNLIAIAQVLE 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatANP_650775.2 PRK07488 8..491 CDD:236030 119/542 (22%)
gatA 18..490 CDD:234572 117/534 (22%)
Y53F4B.18NP_497103.1 GatA 47..532 CDD:223232 119/542 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0154
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.729574 Normalized mean entropy S1380
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.760

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