DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GatA and faah-3

DIOPT Version :9

Sequence 1:NP_650775.2 Gene:GatA / 42283 FlyBaseID:FBgn0260779 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_500017.2 Gene:faah-3 / 176916 WormBaseID:WBGene00019068 Length:570 Species:Caenorhabditis elegans


Alignment Length:581 Identity:136/581 - (23%)
Similarity:222/581 - (38%) Gaps:167/581 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KQLTASYSDGQLSPRRVTEDALQDALRWKTLNAFVRLTPE-------------QAGQQAQDAEQ- 60
            ::|..|..:|::.|             .:||.||.|...|             :|.:.|::.|. 
 Worm    67 EELRNSLKNGEIGP-------------VETLRAFQRKAYESTEKTNCVCFFIQEALEIAENLEHL 118

  Fly    61 ----RYKLRQPISDLDGVTIAIKDNFCTKDVHTTCASRMLQDFVPPYDATVCS--RLKQAGAVIL 119
                .|: :.|   |.||.::||::...|::.:|..  ..|....|.||...|  :|.:.|||..
 Worm   119 ATDPNYQ-KPP---LFGVPVSIKESIHVKNLDSTAG--YAQKINNPSDANSVSVDQLIRLGAVPF 177

  Fly   120 GKTNMDQFAMGAGTVDSLYGPTKNIWSEDLNKDHWRIAGGSSGGSASAVAAGLCYAAIGSDTGGS 184
            ..||:....:..|..:.:||.|.|      ..|:.|:.||||||.|:.|:.|.....||:|.|||
 Worm   178 VHTNIPIALLSYGCSNGVYGTTLN------PLDNSRVPGGSSGGEAALVSLGGSVLGIGTDVGGS 236

  Fly   185 TRNPASYCGVVGLK------PTYGLVSRHGLIP---LVNSMDVPGIFARSVSDCVAVLNTVAGPD 240
            .|.|||:||:.|.|      |..|   :...||   |:  :.|.|..|:::..||..|.......
 Worm   237 IRTPASFCGLAGFKSSSDRSPQLG---KTASIPGRQLL--LSVEGPIAKNIDVCVEYLRLKWNDP 296

  Fly   241 KLDSTTIRQPFTRLHLPEVGQIDL----STVRIGIPKEYHCHGLSA-------EVLETWSKVADL 294
            .|....:..|      |...|.:|    ..::||.   |...|...       .|.||   ||.|
 Worm   297 LLYKKDVYMP------PVKFQENLYNSEKPLKIGY---YTFDGYQTASPAYQRAVRET---VAVL 349

  Fly   295 LECSGASVR-QVSLPNTAASIFVYTILNQCEVASNMARYDGIEYGHRATDERSTEQLYALSRAEG 358
            .|.....|. :|..|:...|||       |..|:    .||              .||.:.... 
 Worm   350 KELGHELVPFEVPQPDHMYSIF-------CAGAT----ADG--------------GLYLMDSLA- 388

  Fly   359 FNDVVKTRILTG-------NFL--LLKKNYDHYFEKAL---------RVRRL--IAEDFARVFDS 403
             ||::......|       :|:  ||:|.:.|..|:.:         .:|::  ..||:...|..
 Worm   389 -NDIIPPEADIGFPVAKLPHFIQRLLRKYWHHRRERQIIQELPHDTEEMRQMHEKIEDYRHEFVL 452

  Fly   404 SAKEERVDILLTPTTLTEAPLYKDFASLTNRDQCAVQDFCTQPA--NMAGIPAVSIPIRLSQ--- 463
            :.:.:::|.|:.|......|.:    .:.|:    :....:.||  |:....|.::|:.:.:   
 Worm   453 AMRAKKLDALVCPAFGCPPPHH----GMPNK----ILGANSYPALYNLIDFAAGTVPVTVQKQED 509

  Fly   464 ------------------------AGLPLSLQLMSNSLNEQLLLTVARWIEAQVEFDSLEH 500
                                    .|||:|:|:.:....|::.|.:.:.:||::...|..|
 Worm   510 EVELRKMKTEDSWDRRVVTESKNCIGLPVSVQIATPPYREEMCLRLLKQVEAKIGLYSRTH 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatANP_650775.2 PRK07488 8..491 CDD:236030 132/570 (23%)
gatA 18..490 CDD:234572 130/561 (23%)
faah-3NP_500017.2 Amidase 82..553 CDD:366635 127/534 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0154
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.729574 Normalized mean entropy S1380
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.760

Return to query results.
Submit another query.