Protein Alignment snRNP-U1-C and Zmat5

DIOPT Version :10

• Sequence 1: NP_650767.1
• Gene: snRNP-U1-C / 42274
• FlyBaseID: FBgn0261792
• Length: 145
• Species: Drosophila melanogaster
• Sequence 2: NP_080291.1
• Gene: Zmat5 / 67178
• MGIID: 1914428
• Length: 170
• Species: Mus musculus
• Alignment Length: 165
• Identity: 35/165 - (21%)
• Similarity: 52/165 - (31%)
• Gaps: 81/165 - (49%)

  Fly     3 KYYCDYCDTYLTHDSPSVRKTHCTGRKH-----------RD------------------------ 32
            :|:|||||... .|:...||.|..|.:|           ||
Mouse     4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLTGQCD 67

  Fly    33 ---NVKF----------------------------------YYQKWMEEQAQHLIDATTAAFKAG 60
               |.:|                                  :.:.|:|::|:.|..|.::  :|.
Mouse    68 FGSNCRFSHMSEQDLQELSVQVEEERRAREWPLETAELPEGHLEDWLEKRAKRLSSAPSS--RAE 130

  Fly    61 KITNNPFAGGPGGAPPKPAGVSIPPPNMGAPPRPG 95
            .|....|. .|.|.||    :...||::.||| ||
Mouse   131 PIRTTVFQ-YPVGWPP----MQELPPSLRAPP-PG 159

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-C	NP_650767.1	zf-U1	1..38	CDD:368798	16/106 (15%)
Zmat5	NP_080291.1	zf-U1	4..>46	CDD:389966	14/42 (33%)
		zf-CCCH	54..76	CDD:459885	2/21 (10%)