Protein Alignment snRNP-U1-C and snrpc

DIOPT Version :9

• Sequence 1: NP_650767.1
• Gene: snRNP-U1-C / 42274
• FlyBaseID: FBgn0261792
• Length: 145
• Species: Drosophila melanogaster
• Sequence 2: NP_775358.1
• Gene: snrpc / 192330
• ZFINID: ZDB-GENE-020419-26
• Length: 159
• Species: Danio rerio
• Alignment Length: 161
• Identity: 95/161 - (59%)
• Similarity: 108/161 - (67%)
• Gaps: 26/161 - (16%)

  Fly     1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLIDATTAAFKAGKITNN 65
            |||:|||||||||||||||||||||:||||::|||.|||||||||||.|||.|||||:.|||...
Zfish     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPT 65

  Fly    66 PFAGGPGGAPPKPAGVSIPPPNMGAPPRPGMPGMPYM--PPLMNPMMGMRP-------------P 115
            ||.    |||| |.|..:|.|::|.||||||...|.|  ||:| ||||..|             |
Zfish    66 PFP----GAPP-PGGSLLPHPSIGGPPRPGMLPAPPMGGPPMM-PMMGPPPHAMMPGGPGPGMRP 124

  Fly   116 PIMNPMAMM-GP----PPPLGTIPGVRPGIM 141
            |:..||.|| ||    ||....:|.||||::
Zfish   125 PMGGPMQMMPGPHMMRPPARPMMPAVRPGMV 155

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-C	NP_650767.1	zf-U1	1..38	CDD:368798	31/36 (86%)
snrpc	NP_775358.1	zf-U1	1..38	CDD:114912	31/36 (86%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	61..99		21/42 (50%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	96	1.000	Domainoid score	I7308
eggNOG	1	0.900	-	-		E1_COG5136
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	175	1.000	Inparanoid score	I4058
OMA	1	1.010	-	-		QHG53368
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0003605
OrthoInspector	1	1.000	-	-		oto39378
orthoMCL	1	0.900	-	-		OOG6_102948
Panther	1	1.100	-	-	LDO	PTHR31148
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1268
SonicParanoid	1	1.000	-	-		X2482
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	13	12.860