DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smu1 and AT5G60940

DIOPT Version :10

Sequence 1:NP_650766.1 Gene:Smu1 / 42272 FlyBaseID:FBgn0038666 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_200902.1 Gene:AT5G60940 / 836215 AraportID:AT5G60940 Length:429 Species:Arabidopsis thaliana


Alignment Length:408 Identity:81/408 - (19%)
Similarity:158/408 - (38%) Gaps:88/408 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 VPSSRLLALLGQALKWQQHQGLL------------------PPGTTIDLFRGKAAMKDQEEEMYP 202
            ||.:|||.|:.:.|. .::.|.|                  |...:||.....|....:....:.
plant    52 VPPNRLLELVAKGLA-AENNGTLRGVSSSVLLPSSYGSITTPRTASIDFSVNHAKGSSKTIPKHE 115

  Fly   203 TQLFRQIKFGQKSHVECAQFSPDGQYLITGSVDGFLEVWNFTTGKVRKDLKYQAQDQ-----FMM 262
            ::...:    .||.|.||:|||||.:..||..|..:::  |...||::.:....|.:     |..
plant   116 SKTLSE----HKSVVRCARFSPDGMFFATGGADTSIKL--FEVPKVKQMISGDTQARPLIRTFYD 174

  Fly   263 MEQAVLALNFSRDSEMVASGAQDGQIKVWRIITGQCLRKFEKAHTKGITCLQFSRDNSQVLSASF 327
            ..:.:..|:|...|.::.|.|:|           .|::.|:.:.|......:..:|...|.|.||
plant   175 HAEPINDLDFHPRSTILISSAKD-----------NCIKFFDFSKTTAKRAFKVFQDTHNVRSISF 228

  Fly   328 DYTVRLHGLKSGKMLKEFKGH------------------------SSFVNEATFTPDGHSVLSAS 368
            .        .||:.|.....|                        |..:|:..::..|...::||
plant   229 H--------PSGEFLLAGTDHPIPHLYDVNTYQCFLPSNFPDSGVSGAINQVRYSSTGSIYITAS 285

  Fly   369 SDGTVKVWSLKTTECVATYKPLGNELAVN--TVLILPKNPEHFIVCNRSNTVVIMNM-QGQIVRS 430
            .||.::::...:.:||   :.:||....:  |..:..|:....:...:.:||.:..: .|::|:.
plant   286 KDGAIRLFDGVSAKCV---RSIGNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLWEIGSGRMVKE 347

  Fly   431 FSSGKR---EGGAFISATLSPRGEFIYCAGE--DQVLYCFSVSSGKLERTLNVHEKDVIGLTHHP 490
            :...||   ...|..:.|    .||:....|  ::|:...:.::.|:.:..:.|......:.|.|
plant   348 YLGAKRVKLRSQAIFNDT----EEFVISIDEASNEVVTWDARTADKVAKWPSNHNGAPRWIEHSP 408

  Fly   491 HQNLLASYSEDGLLKLWK 508
            .:::..:...|..::.||
plant   409 VESVFVTCGIDRSIRFWK 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smu1NP_650766.1 LisH_TPL 7..36 CDD:375350
CTLH 40..90 CDD:128914
WD40 <203..509 CDD:441893 68/343 (20%)
WD40 repeat 218..256 CDD:293791 13/37 (35%)
WD40 repeat 267..303 CDD:293791 7/35 (20%)
WD40 repeat 311..346 CDD:293791 8/34 (24%)
WD40 repeat 352..432 CDD:293791 16/82 (20%)
WD40 repeat 440..477 CDD:293791 7/38 (18%)
WD40 repeat 483..507 CDD:293791 3/23 (13%)
AT5G60940NP_200902.1 WD40 115..426 CDD:238121 66/342 (19%)
WD40 repeat 128..174 CDD:293791 15/47 (32%)
WD40 repeat 180..216 CDD:293791 9/46 (20%)
WD40 repeat 223..262 CDD:293791 8/46 (17%)
WD40 repeat 270..306 CDD:293791 8/38 (21%)
WD40 repeat 313..349 CDD:293791 6/35 (17%)
WD40 repeat 357..398 CDD:293791 7/44 (16%)
Blue background indicates that the domain is not in the aligned region.

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