Protein Alignment Smu1 and VIP3

DIOPT Version :10

• Sequence 1: NP_650766.1
• Gene: Smu1 / 42272
• FlyBaseID: FBgn0038666
• Length: 509
• Species: Drosophila melanogaster
• Sequence 2: NP_194712.1
• Gene: VIP3 / 829105
• AraportID: AT4G29830
• Length: 321
• Species: Arabidopsis thaliana
• Alignment Length: 229
• Identity: 59/229 - (25%)
• Similarity: 102/229 - (44%)
• Gaps: 16/229 - (6%)

  Fly   165 LGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEMYPTQLFRQIKFGQKSHVECAQFSPDGQYL 229
            ||.|.......|::...::||.|   ..:.|.:     |.....:.....|.|...||.|.|..|
plant    61 LGVAALAAHPSGIIAASSSIDSF---VRVFDVD-----TNATIAVLEAPPSEVWGMQFEPKGTIL 117

  Fly   230 -ITGSVDGFLEVWNFTTGKVRKDLKYQAQD-----QFMMMEQAVLALNFSRDSEMVASGAQDGQI 288
             :.|.....:::|:..:.::...|.....|     .....::.||::.:|.:.:.:|.|:.||.|
plant   118 AVAGGSSASVKLWDTASWRLISTLSIPRPDAPKPSDKTSSKKFVLSVAWSPNGKRLACGSMDGTI 182

  Fly   289 KVWRIITGQCLRKFEKAHTKGITCLQFSRDNSQVL-SASFDYTVRLHGLKSGKMLKEFKGHSSFV 352
            .|:.:...:.|.:.| .|...:..|.||..:.:|| |.|.|..|.:|..:...:|....||:|:|
plant   183 CVFDVDRSKLLHQLE-GHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLLGSMSGHTSWV 246

  Fly   353 NEATFTPDGHSVLSASSDGTVKVWSLKTTECVAT 386
            .....:|||.::.:.|||.||::|.||....:.|
plant   247 LSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQT 280

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Smu1	NP_650766.1	LisH_TPL	7..36	CDD:375350
		CTLH	40..90	CDD:128914
		WD40	<203..509	CDD:441893	51/191 (27%)
		WD40 repeat	218..256	CDD:293791	8/38 (21%)
		WD40 repeat	267..303	CDD:293791	10/35 (29%)
		WD40 repeat	311..346	CDD:293791	11/35 (31%)
		WD40 repeat	352..432	CDD:293791	13/35 (37%)
		WD40 repeat	440..477	CDD:293791
		WD40 repeat	483..507	CDD:293791
VIP3	NP_194712.1	WD40	<12..319	CDD:441893	59/229 (26%)
		WD40 repeat	17..58	CDD:293791
		WD40 repeat	64..102	CDD:293791	7/45 (16%)
		WD40 repeat	105..142	CDD:293791	8/36 (22%)
		WD40 repeat	162..197	CDD:293791	9/34 (26%)
		WD40 repeat	203..240	CDD:293791	11/36 (31%)
		WD40 repeat	246..282	CDD:293791	13/35 (37%)
		WD40 repeat	288..318	CDD:293791