DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and galns

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001074110.2 Gene:galns / 791159 ZFINID:ZDB-GENE-070112-1152 Length:514 Species:Danio rerio


Alignment Length:576 Identity:130/576 - (22%)
Similarity:212/576 - (36%) Gaps:167/576 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IFTLWLIAGC-SAGPQNVLLLLADDAGF-ESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVSSCS 69
            |..||.:..| ::|..|::::|.||.|: :.|.:.....:||.||.:|.:|:||.|.:|:...||
Zfish     7 ICVLWTVYVCQTSGSPNIIIMLMDDMGWGDLGVFGEPSKETPYLDLMAAQGMLFPNFYTANPLCS 71

  Fly    70 PSRSQLLTGQAGHSSGMYGLHQGVHNF--------NVLPDTGSLPNLIRDQSGGRILSGIIGKKH 126
            |||:.||||:....:|.|..:....|.        .:..|...||.|::::   ..:|.|:||.|
Zfish    72 PSRAALLTGRLPVRNGFYTTNAHARNAYTPQEIVGGISADEILLPELLKNK---HYVSKIVGKWH 133

  Fly   127 VG----------------AANNFRFD------------FEQTE------EQHSIN-QIGR-NITR 155
            :|                .|.|..|.            :..:|      |:..|| :.|. |:|:
Zfish   134 LGHRTQYLPLKHGFDEWFGAPNCHFGPYNDSSRPNIPVYNNSEMKGRYYEEFEINVKTGESNLTQ 198

  Fly   156 MKEYARQ---FLKQAKDEKKPFFLMVGFHDPHRCGHITPQFGEFCERWGSGEEGMGSIPDWKPIY 217
            :  |.::   |:.|....::||||.......|...:.:..|      .|..:.|.         |
Zfish   199 L--YLKEGLDFISQQAMAQRPFFLYWAPDATHAPVYASKPF------LGKSQRGR---------Y 246

  Fly   218 YDWRNLDVPAWLPDTDVVRQELAAQYMTISRLDQGVGLMLKELEAAGVADQTLVIYTSDNG---- 278
            .|                         .:..||..:|.:|..|.:.|:.:.|||.:|||||    
Zfish   247 GD-------------------------AVMELDDSIGQILAHLVSLGIQNDTLVFFTSDNGAALM 286

  Fly   279 ---------PPFPGGRTNLYEHGIRSPLIISSPNKEDR---HHEATAAMVSLLDIYPSVMDALQI 331
                     .||..|:...:|.|:|.|.:...|.:...   .|:    :.|::|::.:.:....:
Zfish   287 SGPLQSGSNAPFLCGKETTFEGGMREPAMAWWPGQIPAGTVSHQ----LASVMDLFSTSLSVAGV 347

  Fly   332 PRPNDTKIVGRSILPVLREEPPIKESDSVFGSHSYHEVTMAY---PMRMVRNRRYKLIHNINYWA 393
            ..|:|..|.|..:.|||            |...........|   .|..||..:||    .:||.
Zfish   348 SPPDDRVIDGVDLSPVL------------FNGSLIDRPIFYYRGNQMMAVRIGQYK----AHYWT 396

  Fly   394 DFPIDQDFYTSPTF---QQILNATLRKQTLPWYRSLLQYYQRPEWELYDIKTDPLE--------- 446
            .....::|.....|   |::...|...|.....:.|:.:..|...|.|.:.....|         
Zfish   397 WSNSMEEFNKGINFCPGQEVPGVTTHTQQEHTMQPLIFHLGRDPGERYPLSVQCKEYRDVFRRVT 461

  Fly   447 ---------------RFNLADKAKYNGT---LKQLREQLFDWQVATKDPWRCA-PH 483
                           :.|:.|.|..|.|   .:||.:.|   :.....||:|. ||
Zfish   462 AVVEQHQKLLIPGQPQLNMCDLAVMNWTPPGCEQLGKCL---KAPESQPWKCDWPH 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 121/555 (22%)
SGSH 22..471 CDD:293751 120/545 (22%)
galnsNP_001074110.2 AslA 18..475 CDD:225661 113/521 (22%)
GALNS 22..486 CDD:293776 115/528 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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