DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and Gns

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_083640.1 Gene:Gns / 75612 MGIID:1922862 Length:544 Species:Mus musculus


Alignment Length:563 Identity:121/563 - (21%)
Similarity:215/563 - (38%) Gaps:184/563 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IFTLWLIAGC-----SAGPQNVLLLLADDAGFESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVS 66
            :..|.|:.||     :|...||||||.||...|.|. :....:|..|  :.::|:.|::|:...:
Mouse    20 LLLLPLLGGCLGLVGAARRPNVLLLLTDDQDAELGG-MTPLKKTKAL--IGEKGMTFSSAYVPSA 81

  Fly    67 SCSPSRSQLLTGQAGHSSGMYGLHQGVHN----------FNVLPDTGSLPNLIRDQSG------G 115
            .|.|||:.:|||:..|:      |..|:|          :..:.:..:.|.:::...|      |
Mouse    82 LCCPSRASILTGKYPHN------HHVVNNTLEGNCSSKAWQKIQEPYTFPAILKSVCGYQTFFAG 140

  Fly   116 RIL-------SGIIGKKHVGAANNFRFDFEQTEEQH----SINQIGRNITRMKEYARQFLKQA-- 167
            :.|       :|  |.:|:....::.:..|:..:.:    |||  |:.....:.|:..:|...  
Mouse   141 KYLNEYGAPDAG--GLEHIPLGWSYWYALEKNSKYYNYTLSIN--GKARKHGENYSVDYLTDVLA 201

  Fly   168 ---------KDEKKPFFLMVGFHDPHRCGHITPQFGEFCERWGSGEEGMGSIPDWKPIYYDWRNL 223
                     |...:|||:|:....||......||:.:                       .::|:
Mouse   202 NLSLDFLDYKSNSEPFFMMISTPAPHSPWTAAPQYQK-----------------------AFQNV 243

  Fly   224 DVPA------------WL------PDT--------DVVRQELAAQYMTISRLDQGVGLMLKELEA 262
            ..|.            ||      |.|        |..|:    ::.|:..:|..|..::|.|::
Mouse   244 IAPRNKNFNIHGTNKHWLIRQAKTPMTNSSIRFLDDAFRR----RWQTLLSVDDLVEKLVKRLDS 304

  Fly   263 AGVADQTLVIYTSDNGP-----PFPGGRTNLYEHGIRSPLIISSPNKEDRHHEATAAMVSLLDIY 322
            .|..|.|.:.||||||.     ..|..:..|||..|:.||::..|.  .:.::.:..:||.:|:.
Mouse   305 TGELDNTYIFYTSDNGYHTGQFSLPIDKRQLYEFDIKVPLLVRGPG--IKPNQTSKMLVSNIDLG 367

  Fly   323 PSVMDALQIPRPNDTKIVGRSILPVLREEPPIKESDSVFGSHSYHEVTMAYPMRMVRNRRYKLIH 387
            |:::|...... |.|::.|.|:||:|:.:                           ||..::...
Mouse   368 PTILDLAGYDL-NKTQMDGMSLLPILKGD---------------------------RNLTWRSDV 404

  Fly   388 NINYWAD-------------------FP--IDQDFYTSPTFQQILNATLRKQTLPWYRSLLQYYQ 431
            .:.|..:                   ||  :.:|.|.: |:     |.:|..:..|.   |||.:
Mouse   405 LVEYQGEGRNVTDPTCPSLSPGVSQCFPDCVCEDAYNN-TY-----ACVRTLSSLWN---LQYCE 460

  Fly   432 RPEW----ELYDIKTDPLERFNLADK------AKYNGTLKQLR 464
            ..:.    |:|:|..||.:..|:|..      .|.|..|..|:
Mouse   461 FDDQEVFVEVYNITADPDQITNIAKSIDPELLGKMNYRLMMLQ 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 117/548 (21%)
SGSH 22..471 CDD:293751 116/543 (21%)
GnsNP_083640.1 AslA 35..496 CDD:225661 114/539 (21%)
G6S 38..487 CDD:293766 112/527 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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