DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and gnsa

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001025379.1 Gene:gnsa / 566506 ZFINID:ZDB-GENE-050107-5 Length:538 Species:Danio rerio


Alignment Length:537 Identity:119/537 - (22%)
Similarity:203/537 - (37%) Gaps:148/537 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 IAGCSAGPQ-NVLLLLADDAGFESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVSSCSPSRSQLL 76
            :|.....|: |::|:|.||.....|..: ...:|..|  :...|:.|.|||.:...|.|||:.:|
Zfish    24 LAAAKTNPKPNIVLILTDDLDVSIGGMI-PLVKTKKL--IGDAGITFTNAFVASPLCCPSRASIL 85

  Fly    77 TGQAGHSSGMYGLHQGVHNF------------NVLPDTGSLPNLIRDQS------GGRILSGIIG 123
            ||:..|:      |..|:|.            ...||  :.|..::..:      .|:.|:....
Zfish    86 TGKYPHN------HHVVNNTLEGNCSSTAWQKGQEPD--AFPAFLQKHAAYQTFFAGKYLNEYGS 142

  Fly   124 KK-----HVGAANNFRFDFEQTEEQH----SINQIGRNITRMKEYARQFLK-----------QAK 168
            ||     ||....:..|..|:..:.:    |:|  ||.....:.|:..:|.           :.|
Zfish   143 KKAGGVEHVPLGWDHWFALERNSKYYNYTLSVN--GRAQRHGQNYSEDYLTDVLANVSIDFLENK 205

  Fly   169 DEKKPFFLMVGFHDPHRCGHITPQFGEFCERWGSGEEGMGSIPDWK----PIY------YDW--R 221
            ..::|||:||....||......||:.             .|.||.|    |.:      ..|  |
Zfish   206 SNRRPFFMMVSTPAPHSPWTAAPQYD-------------SSFPDLKAPRDPNFNIHGKDKHWLIR 257

  Fly   222 NLDVPAWLPDTDVVRQELAAQYMTISRLDQGVGLMLKELEAAGVADQTLVIYTSDNGP-----PF 281
            ....|......:.:......::.|:..:|..|..::::|:..|....|.||:|||||.     ..
Zfish   258 QAKTPMSNASVEFLDNAYRKRWRTLLSVDDLVEKLVRKLDIRGELSNTYVIFTSDNGYHTGQFSL 322

  Fly   282 PGGRTNLYEHGIRSPLIISSPNKEDRHHEATAAMVSLLDIYPSVMDALQIPRPNDTKIVGRSILP 346
            |..:..|||..||.||::..||  .:.::.:...::.:|:.|:::|.... ..|||::.|.|.||
Zfish   323 PMDKRQLYEFDIRVPLLVRGPN--IKPNQTSPLPIANVDLGPTILDIAGY-NVNDTQMDGMSFLP 384

  Fly   347 VLREEPPIKESDSVFGSHSYHE-------------------VTMAYP---MRMVRNRRYKLIHNI 389
            ::..|    .:.||:.|....|                   |:..:|   .....|..|..:..:
Zfish   385 IMVGE----LNSSVWRSDVLVEYEGEGRNVSDPACPLLGPGVSECFPDCVCEDAYNNTYACVRTV 445

  Fly   390 NYWADFPIDQDFYTSPTFQQILNATLRKQTLPWYRSLLQYYQRPE----WELYDIKTDPLERFNL 450
                          ||      ||.            |||.:..:    .|:|::.:||.:..|:
Zfish   446 --------------SP------NAN------------LQYCEFDDNEVFVEVYNLTSDPFQLSNI 478

  Fly   451 ADKAKYNGTLKQLREQL 467
            | |:.....|:::..:|
Zfish   479 A-KSIDQEVLEKMNHRL 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 118/533 (22%)
SGSH 22..471 CDD:293751 117/527 (22%)
gnsaNP_001025379.1 AslA 31..480 CDD:225661 115/514 (22%)
G6S 32..482 CDD:293766 115/515 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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