DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and arsk

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001070625.1 Gene:arsk / 562412 ZFINID:ZDB-GENE-060929-332 Length:523 Species:Danio rerio


Alignment Length:538 Identity:114/538 - (21%)
Similarity:206/538 - (38%) Gaps:145/538 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 FLQWIFTLWLIAGCSAGPQNVLLLLAD----DAGFESGAYLNKFCQTPNLDALAKRGLLFNNAFT 63
            :|.|         .|....|::::::|    ...|:.|   ||..|.|.::.:.:.|.:|.|::|
Zfish    18 YLNW---------TSHDRPNIVMIMSDAFDGRLTFQPG---NKVVQLPYINYMRELGSVFLNSYT 70

  Fly    64 SVSSCSPSRSQLLTGQAGHSSGMYGLHQGVHNFNVLPDTGSLPNLIRDQSGGRILSGIIGKKHVG 128
            :...|.|||:.:.:||..|.:..:..::.:|     |:..:..:.:| :||....|  :||    
Zfish    71 NSPICCPSRAAMWSGQFVHLTQSWNNNKCLH-----PNATTWMDDLR-KSGYHTHS--MGK---- 123

  Fly   129 AANNFRFDFEQTEEQHSIN---------------QIGRNIT-----------RMKEY-----ARQ 162
                    .:.|...||::               |.||.:|           .:|::     |.|
Zfish   124 --------LDYTSGHHSVSNRVEAWTRDVPFLLRQEGRPVTDLVGDASTKRVMIKDWTITDAAVQ 180

  Fly   163 FLKQAKDE-KKPFFLMVGFHDPH--RCGHITPQFGEFCERWGSGEEGMGSIPDW-KPIYYDWRNL 223
            :::..... .:||.|.:|.:.||  |...:.|.         :|.....:.|.| ..:.|:  .:
Zfish   181 WIRNTTASLTQPFALYLGLNLPHPYRTDSLGPT---------AGGSTFRTSPYWLNKVSYN--QV 234

  Fly   224 DVPAWLPDTDV---------------------VRQELAAQYMTISRLDQGVGLMLKELEAAGVAD 267
            .||.||...|:                     :|...|..|...:..|..:|.::..|...|..:
Zfish   235 SVPKWLRFKDMHPVDYYSTVTKNCSGHFTEEEIRNIRAFYYAMCAETDGMLGEVMAALRDTGSLN 299

  Fly   268 QTLVIYTSDNGPPFPGGR----TNLYEHGIRSPLIISSPNKEDRHHEATAAMVSLLDIYPSVMDA 328
            :|:|::|||:|......|    .:::|.....||:|..|..:....  .:..|||:||||:|:|.
Zfish   300 KTVVLFTSDHGDLAMEHRQFYKMSMFEGSSHVPLLIMGPGVKSGFE--VSLPVSLVDIYPTVLDL 362

  Fly   329 LQIPRPNDTKIVGRSILPVL-REEPPIKESDSVFGSHSYHEVTMAYPMRMVRNRRYKLI------ 386
            ..:|:...  :.|.|::|:: |......|....:....||.........|:|...:|.|      
Zfish   363 AGVPQTGG--LSGHSLIPLISRVSIHSAEPHPAWAFSEYHGCNANTSTYMLRIAEWKYIAYADGL 425

  Fly   387 ------HNI--------NYWADFP-IDQD-------FYTSPTFQQILNATLRKQTLPWYRSLLQY 429
                  .|:        |..:.|| :.||       ....|:..:.::...::|.|.|.:||...
Zfish   426 NVPPQLFNLSKDESELRNIASQFPDVCQDLDKLLRSIVDYPSVSKSVHRYNKQQFLEWKQSLGDS 490

  Fly   430 YQRP----EWELYDIKTD 443
            |.:.    .|.: |.|.|
Zfish   491 YSQVIASLRWHV-DWKKD 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 112/524 (21%)
SGSH 22..471 CDD:293751 111/519 (21%)
arskNP_001070625.1 AslA 25..445 CDD:225661 96/457 (21%)
ARSK 27..439 CDD:293781 95/449 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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