DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and Arsi

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001033588.1 Gene:Arsi / 545260 MGIID:2670959 Length:573 Species:Mus musculus


Alignment Length:546 Identity:115/546 - (21%)
Similarity:193/546 - (35%) Gaps:189/546 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 PQNVLLLLADDAGFESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVSSCSPSRSQLLTGQAGHSS 84
            |.:::.:|.||.|:....|.....:||.||.||..|:...|.:.. ..|:|||||||||:     
Mouse    46 PPHIIFILTDDQGYHDVGYHGSDIETPTLDRLAAEGVKLENYYIQ-PICTPSRSQLLTGR----- 104

  Fly    85 GMYGLHQGV-HNF------NVLP-DTGSLPNLIRDQSGGRILSGIIGKKHV-------------- 127
              |.:|.|: |:.      |.|| |..:||..:::..   ..:.::||.|:              
Mouse   105 --YQIHTGLQHSIIRPRQPNCLPLDQVTLPQKLQEAG---YSTHMVGKWHLGFYRKECLPTRRGF 164

  Fly   128 --------GAANNFRFD---------FEQTE-EQHSINQIGRNITRMKEYARQFLKQAKDEKKPF 174
                    |..:.:.:|         |:..| |..:....|:..|.:.......:..:.:.:.|.
Mouse   165 DTFLGSLTGNVDYYTYDNCDGPGVCGFDLHEGESVAWGLSGQYSTMLYAQRASHILASHNPQNPL 229

  Fly   175 FLMVGFHDPHRCGHITPQFGEFCERWGSGEEGMGSIPDWKPIYYDWRNLDVPAWLPDTDVVRQEL 239
            ||.|.|...|     ||                  :...:...|.:|.:.        :|.|::.
Mouse   230 FLYVAFQAVH-----TP------------------LQSPREYLYRYRTMG--------NVARRKY 263

  Fly   240 AAQYMTISRLDQGVGLMLKELEAAGVADQTLVIYTSDNGP---------PFPGGRTNLYEHGIRS 295
            ||.   ::.:|:.|..:...|:..|..:.:::|::||||.         |..|.:...:|.|:|.
Mouse   264 AAM---VTCMDEAVRNITWALKRYGFYNNSVIIFSSDNGGQTFSGGSNWPLRGRKGTYWEGGVRG 325

  Fly   296 PLIISSP--NKEDRHHEATAAMVSLLDIYP----------SVMDALQIPRPNDTKIVGRSILPVL 348
            ...:.||  .|:.|   .:.|:|.:.|.||          |..|.|.          |..:.|.:
Mouse   326 LGFVHSPLLKKKRR---TSRALVHITDWYPTLVGLAGGTTSAADGLD----------GYDVWPAI 377

  Fly   349 REEPPIKESDSVFGSHSYHEVTMAYPMRMVRNRRYKLIHNI----NYWADFPIDQDFYTSPTFQQ 409
            .|                   ..|.|       |.:::|||    |:.....::..|   ..:..
Mouse   378 SE-------------------GRASP-------RTEILHNIDPLYNHARHGSLEGGF---GIWNT 413

  Fly   410 ILNATLR------------------KQTLP------WYRSLLQYYQRPEWELYDIKTDPLERFNL 450
            .:.|.:|                  .|||.      |....:...::..| |::|..||.||.:|
Mouse   414 AVQAAIRVGEWKLLTGDPGYGDWIPPQTLASFPGSWWNLERMASIRQAVW-LFNISADPYEREDL 477

  Fly   451 ADK------------AKYNGTLKQLR 464
            |.:            |.||.|...:|
Mouse   478 AGQRPDVVRTLLARLADYNRTAIPVR 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 115/546 (21%)
SGSH 22..471 CDD:293751 114/544 (21%)
ArsiNP_001033588.1 AslA 47..492 CDD:225661 109/532 (20%)
4-S 47..478 CDD:293753 107/518 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 515..550
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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