DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and arsa

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001013561.2 Gene:arsa / 541416 ZFINID:ZDB-GENE-050320-118 Length:503 Species:Danio rerio


Alignment Length:597 Identity:139/597 - (23%)
Similarity:211/597 - (35%) Gaps:209/597 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQFLQWIFTLWLIAG-C-SAGPQNVLLLLADDAGF-ESGAYLNKFCQTPNLDALAKRGLLFNNAF 62
            |..::.|....|||. | .|.|.|.:||.|||.|: :.|.:.:....|||||.||..||.|.:.:
Zfish     2 MDLMRIIALCALIAAHCVGASPPNFVLLFADDLGYGDLGCFGHPCSLTPNLDRLAANGLRFTDFY 66

  Fly    63 TSVSSCSPSRSQLLTGQAGHSSGMYG--LHQGVHNFNVLPDTGSLPNLIRDQSGGRIL------S 119
            .:...|||||:.||||:....||:|.  |:.|        ..|.||  :.:.:...:|      :
Zfish    67 VTSPVCSPSRAALLTGRYQTRSGIYPGVLYPG--------SRGGLP--LNETTIAEVLKTQGYST 121

  Fly   120 GIIGKKHVGAANNFRF------------------------------------------------- 135
            .|:||.|:|...|..:                                                 
Zfish   122 AIVGKWHLGVGLNGTYLPTRHGFDSYLGIPYSHDQGPCQNLSCFPPDVKCFGLCDQGVVTVPLLF 186

  Fly   136 ---------DFEQTEEQHSINQIGRNITRMKEYARQFLKQAKDEKKPFFLMVGFHDPHRCGHITP 191
                     ||.|.|:.:.            |:|.||:..:..:.:||||....|..|     .|
Zfish   187 NEIIKQQPADFLQLEKAYG------------EFASQFISDSVKDNRPFFLYYPSHHTH-----YP 234

  Fly   192 QFGEFCERWGSGEEGMGSIPDWKPIYYDWRNLDVPAWLPDTDVVRQELAAQYMTISRLDQGVGLM 256
            |:        :|.:..|..|..                |..|.:.:           .|..||.:
Zfish   235 QY--------AGADYAGKSPRG----------------PFGDALME-----------FDGTVGKI 264

  Fly   257 LKELEAAGVADQTLVIYTSDNGPPF----PGGRTNL--------YEHGIRSPLIISSPN--KEDR 307
            |:.||..||.:.||:.:|.|:||..    .||...|        ||.|:|.|.|...|.  |.. 
Zfish   265 LQTLEETGVINNTLIFFTGDSGPELMRKSRGGNAGLMKCGKGTTYEGGMREPAIAHWPGFIKPG- 328

  Fly   308 HHEATAAMVSLLDIYPSVMDALQIPRPNDTKIVGRSILPVLREEPPIKESDSVFGSHSYHEVTMA 372
               .|.|:.|.|||.|:.......|.| :.::.|..:..:|....|.|..            ||.
Zfish   329 ---VTRALASSLDILPTFAKLAGAPLP-EVQLDGVEMTDILFNLGPSKRQ------------TMF 377

  Fly   373 YPMRMVRNRRYKLIHNINY------WADFPIDQDFYTSPTFQQILNATLRKQTLP----WYRSLL 427
            |         |....::.|      |.:|  ...:||        ......::.|    ...:.|
Zfish   378 Y---------YPTDPSVKYGVFAVRWENF--KAHYYT--------RGAAHSESTPDNSCSLLAFL 423

  Fly   428 QYYQRPEWELYDIKTDPLERFNLADKAKYNGTLKQLREQLFDWQVATKDPWRCAPHAVLQEQGVY 492
            :|:..|  .|::::|||.|.:|| |..:::...||::        |.|..:..:  .|..|..:.
Zfish   424 KYHDPP--LLFNLETDPSENYNL-DGDQWDAVRKQIQ--------AVKQQFEAS--MVFGESQIS 475

  Fly   493 KD-----QPVCL 499
            |.     :|.|:
Zfish   476 KGIDSLLEPCCI 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 127/549 (23%)
SGSH 22..471 CDD:293751 124/539 (23%)
arsaNP_001013561.2 AslA 21..468 CDD:225661 128/557 (23%)
ARSA 23..500 CDD:293777 132/576 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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