DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sgsh and Arsk

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001041382.1 Gene:Arsk / 365619 RGDID:1310182 Length:563 Species:Rattus norvegicus


Alignment Length:585 Identity:122/585 - (20%)
Similarity:216/585 - (36%) Gaps:173/585 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 NVLLLLADD----AGFESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVSSCSPSRSQLLTGQAGH 82
            ||:|:.:|.    ..|:.|:.:.|.   |.::.:..||..|.||:|:...|.|||:.:.:|...|
  Rat    33 NVVLVASDSFDGRLTFQPGSQVVKL---PFINFMRARGTTFLNAYTNSPICCPSRAAMWSGLFTH 94

  Fly    83 SSGMYGLHQGVH-NFNVLPDTGSLPNLIRDQSGGRILSGIIGKKHVGAANNF-RFDFEQTEEQHS 145
            .:..:...:|:. |:....|                    :.:||......| :.|:  :...||
  Rat    95 LTESWNNFKGLDPNYTTWMD--------------------VMEKHGYQTQKFGKLDY--SSGHHS 137

  Fly   146 IN---------------QIGRNITRM-----------KEY-----ARQFLKQAKDEKKPFFLMVG 179
            |:               |.||.|..:           |::     |..:|:|. :..|||.|.:|
  Rat   138 ISNRVEAWTRDVAFLLRQEGRPIINLIPDKNRRRVMDKDWQNTDKAIAWLRQV-NSTKPFVLYLG 201

  Fly   180 FHDPHRCGHITPQFGEFCERWGSGEEGMGSIPDW-KPIYYDWRNLDVPAWLPDTDV--------- 234
            .:.||  .:.:|..||     ..|.....:...| :.:.||  .:.:|.||..:::         
  Rat   202 LNLPH--PYPSPSSGE-----NFGSSTFHTSLYWLEKVAYD--AIKIPKWLALSEMHPVDYYSSY 257

  Fly   235 ------------VRQELAAQYMTISRLDQGVGLMLKELEAAGVADQTLVIYTSDNGPPFPGGR-- 285
                        ::...|..|...:..|..:|.::..|....:..:|:||||||:|......|  
  Rat   258 TKNCTGKFTENEIKNIRAFYYAMCAETDAMLGEIILALHKLNLLQKTIVIYTSDHGEMAMEHRQF 322

  Fly   286 --TNLYEHGIRSPLIISSPNKEDRHHEATAAMVSLLDIYPSVMDALQIPRPNDTKIVGRSILPVL 348
              .::||.....|:::..|.  .:.:....::|||:||||:::|...||.|  ..:.|.|:||: 
  Rat   323 YKMSMYEASAHVPILMMGPG--IKANLQVPSLVSLVDIYPTMLDIAGIPLP--LNLSGYSLLPL- 382

  Fly   349 REEPPIKESDSVFGSH-------SYHEVTMAYPMRMVRNRRYKLI-------------------- 386
              ......:|..|..|       .:|.........|:|..::|.|                    
  Rat   383 --SSNTSANDQAFRVHHPPWILSEFHGCNANASTYMLRTGQWKYIAYSDGTLVQPQLFDLSLDPD 445

  Fly   387 HNINYWADFP-----IDQDFYTSPTFQQILNATLR---KQTLPWYRSLLQYYQRPEWELYDIKTD 443
            ...|...:||     :||...:...:.::..:..|   :|.:.|.:|:.|               
  Rat   446 ELTNIATEFPEITYSLDQQLRSVINYPKVSASVHRYNKEQFIMWKQSVAQ--------------- 495

  Fly   444 PLERFNLADKAKYNGTLKQLREQLFDWQVATKDPWRCAPHAVLQEQGVYKDQPV--CLTLGHEAL 506
                       .|:..:..||... |||   ||| |...:|:.:...::...|.  .|:|.|:.|
  Rat   496 -----------NYSNYIAHLRWHQ-DWQ---KDP-RKYENAIQRWLAIHSSPPTHSPLSLVHQWL 544

  Fly   507  506
              Rat   545  544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 112/551 (20%)
SGSH 22..471 CDD:293751 110/546 (20%)
ArskNP_001041382.1 ARSK 32..445 CDD:293781 96/453 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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