DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and CG8646

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_610807.3 Gene:CG8646 / 36394 FlyBaseID:FBgn0033763 Length:562 Species:Drosophila melanogaster


Alignment Length:592 Identity:126/592 - (21%)
Similarity:221/592 - (37%) Gaps:213/592 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 WIFTLWLIAGC-------------SAGPQNVLLLLADDAGF-ESGAYLNKFCQTPNLDALAKRGL 56
            |.  ||||  |             |....|::.:||||.|| :.|.:.:....|||:||||..|:
  Fly     2 WF--LWLI--CLLLPIIDAAEVEKSPAKPNIIFILADDLGFNDVGFHGSAEIPTPNIDALAYSGI 62

  Fly    57 LFNNAFTSVSSCSPSRSQLLTGQAGHSSGMYGLHQGVHNFNV-------LP-DTGSLPNLIRDQS 113
            :.|..:.: ..|:||||.|:||:       |.:|.|:.:..:       || :...||..:.:..
  Fly    63 ILNRYYVA-PICTPSRSALMTGK-------YPIHTGMQHTVLYAAEPRGLPLEEKILPQYLNELG 119

  Fly   114 GGRILSGIIGKKHVGAANNFRFDF----------------EQTEEQHSI---NQIG---RNITR- 155
               ..|.|.||.|:|   :::..:                .|....|:.   ||.|   ||.|: 
  Fly   120 ---YTSHIAGKWHLG---HWKLKYTPLYRGFSSHVGFWSGHQDYNDHTAVENNQWGLDMRNGTQV 178

  Fly   156 ------------MKEYARQFLKQAKDEKKPFFLMVGFHDPHRCGHITPQFGEFCERWGSGEEGMG 208
                        :.:::.:.:......|.|.||.|.    |...|.:..:.              
  Fly   179 AYDLHGHYTTDVITDHSVKVIANHNATKGPLFLYVA----HAACHSSNPYN-------------- 225

  Fly   209 SIPDWKPIYYDWRNLDVPAWLPDTDVV---------RQELAAQYMTISRLDQGVGLMLKELEAAG 264
                             |..:||.||:         |::.||.   :|::|..||.::.:|..:.
  Fly   226 -----------------PLPVPDNDVIKMSHIPNYKRRKFAAM---VSKMDNSVGQIVDQLRKSN 270

  Fly   265 VADQTLVIYTSDNGPP-----------FP--GGRTNLYEHGIRSPLIISSP--NKEDRHHEATAA 314
            :.:.:::|::||||.|           :|  |.:..|:|.|:|:..::.||  .|..|....|  
  Fly   271 MLENSIIIFSSDNGGPAQGFNLNFASNYPLKGVKNTLWEGGVRAAGLMWSPLLKKSQRVSNQT-- 333

  Fly   315 MVSLLDIYPSVMDAL--QIPRPNDTK-IVGRSILPVLREEPP------IKESDSVFGSHSYHEVT 370
             :.::|..|::::|.  |....|.:| |.|:||...|.::..      :...|.::||.:     
  Fly   334 -MHIIDWLPTLLEAAGGQPALSNLSKQIDGQSIWRALVQDKASPRLNVLHNIDDIWGSAA----- 392

  Fly   371 MAYPMRMVRNRRYKLIHNINY---WADFPIDQDFYTSPTFQ--------QILNATLRKQTLPWYR 424
                   :....:||:...||   |       |.:..|..:        |::..:...:.|   .
  Fly   393 -------LSVGDWKLVKGTNYRGSW-------DGWYGPAGERDPRLYDWQLVGRSRAGKAL---E 440

  Fly   425 SLLQYYQRPEWE-----------------------------LYDIKTDPLERFNLADKAKYNGTL 460
            :|.....|.:.:                             |:.|:.||.|::|||  .:|...:
  Fly   441 ALKMLPSRADQQRIRAAATVSCPGQSSQGTSCVATAFSAPCLFHIRDDPCEQYNLA--KQYPEVV 503

  Fly   461 KQLREQL 467
            ..|..:|
  Fly   504 NALMTEL 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 120/568 (21%)
SGSH 22..471 CDD:293751 119/563 (21%)
CG8646NP_610807.3 AslA 25..459 CDD:225661 108/510 (21%)
4-S 26..405 CDD:293753 99/445 (22%)
DUF4976 <462..531 CDD:303608 11/51 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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