DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and ARSH

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001011719.1 Gene:ARSH / 347527 HGNCID:32488 Length:562 Species:Homo sapiens


Alignment Length:600 Identity:131/600 - (21%)
Similarity:210/600 - (35%) Gaps:183/600 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 NVLLLLADDAGF-ESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVSSCSPSRSQLLTGQAGHSSG 85
            |::||:|||.|. :...|.|....|||:|.||..|:.......:.|.|:|||:..|||:....||
Human     8 NIVLLMADDLGVGDLCCYGNNSVSTPNIDRLASEGVRLTQHLAAASMCTPSRAAFLTGRYPIRSG 72

  Fly    86 MYGLHQGVHNFNVLPDTGSLPNLIRDQSGGRIL------SGIIGKKHVG---AANN--------- 132
            |...:.....|..|..:|.||.  .:.:..::|      :|:|||.|:|   |:.|         
Human    73 MVSAYNLNRAFTWLGGSGGLPT--NETTFAKLLQHRGYRTGLIGKWHLGLSCASRNDHCYHPLNH 135

  Fly   133 -FRFDF------------EQTEEQHSINQIGRNITRMKEYARQFLKQAKDEKKPFFLMVGFHDPH 184
             |.:.:            .:|.|.|...:|           :.::........||.|::      
Human   136 GFHYFYGVPFGLLSDCQASKTPELHRWLRI-----------KLWISTVALALVPFLLLI------ 183

  Fly   185 RCGHITPQFGE----------------------------FCERWG-------------------- 201
                  |:|..                            |..||.                    
Human   184 ------PKFARWFSVPWKVIFVFALLAFLFFTSWYSSYGFTRRWNCILMRNHEIIQQPMKEEKVA 242

  Fly   202 --SGEEGMGSIPDWKP----IYYDWRNLDVPAWLPDTDVVRQELAAQYMTISRLDQGVGLMLKEL 260
              ..:|.:..|..:|.    :::.:.::..|.......|.|.:.......:..:|..||.:|..|
Human   243 SLMLKEALAFIERYKREPFLLFFSFLHVHTPLISKKKFVGRSKYGRYGDNVEEMDWMVGKILDAL 307

  Fly   261 EAAGVADQTLVIYTSDNG---PPFP-----GGRTNLY---------EHGIRSPLIISSPNKEDRH 308
            :...:|:.|||.:|||||   .|..     ||...:|         |.|||.|.|...|:..:..
Human   308 DQERLANHTLVYFTSDNGGHLEPLDGAVQLGGWNGIYKGGKGMGGWEGGIRVPGIFRWPSVLEAG 372

  Fly   309 ---HEATAAMVSLLDIYPSVMDALQIPRPNDTKIVGRSILPVLREEPPIKESDSVFGSHSYHEVT 370
               :|.|    ||:||||::..........|..|.|::::|:|...          .|||.||..
Human   373 RVINEPT----SLMDIYPTLSYIGGGILSQDRVIDGQNLMPLLEGR----------ASHSDHEFL 423

  Fly   371 MAYPMRMVRNRRYKLIHNINYWADFPIDQDFYTSPTFQQILNATLRKQTLPWYRSLL-------Q 428
            ..|....:...|:........|      :..|.:|.|..       :.|...|.|.:       .
Human   424 FHYCGVYLHTVRWHQKDCATVW------KAHYVTPKFYP-------EGTGACYGSGICSCSGDVT 475

  Fly   429 YYQRPEWELYDIKTDPLER--FNLADKAKYNGTLKQLREQLFDWQVATKDPWRCAPHAVLQEQGV 491
            |:..|  .|:||..||.|.  .|..::..::..:|::...:.:.: .|..|       |.|:..|
Human   476 YHDPP--LLFDISRDPSEALPLNPDNEPLFDSVIKKMEAAIREHR-RTLTP-------VPQQFSV 530

  Fly   492 YKD------QPVCLT 500
            :..      ||.|.|
Human   531 FNTIWKPWLQPCCGT 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 123/568 (22%)
SGSH 22..471 CDD:293751 122/563 (22%)
ARSHNP_001011719.1 ALP_like 6..530 CDD:304875 126/583 (22%)
AslA 6..437 CDD:225661 105/467 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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