DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and Arsa

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001030105.2 Gene:Arsa / 315222 RGDID:1310381 Length:507 Species:Rattus norvegicus


Alignment Length:599 Identity:145/599 - (24%)
Similarity:208/599 - (34%) Gaps:218/599 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LWLIAGCS-AGPQNVLLLLADDAGF-ESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVSSCSPSR 72
            |.|.||.| |.|.|::|:.|||.|: :.|:|.:....|||||.||..||.|.:.:..||.|:|||
  Rat     9 LALAAGLSTASPPNIMLIFADDLGYGDLGSYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLCTPSR 73

  Fly    73 SQLLTGQAGHSSGMYGLHQGVHNFNVLPDT-GSLP----NLIRDQSGGRILSGIIGKKHVGAANN 132
            :.||||:....||||   .||    :.|.: |.||    .|....:....|:|:.||.|:|....
  Rat    74 AALLTGRLPVRSGMY---PGV----LGPSSQGGLPLEEVTLAEVLAARGYLTGMAGKWHLGVGPE 131

  Fly   133 FRF-----------DFEQTEEQHSINQIG----------------------RNIT---------- 154
            ..|           ....:.:|.....:.                      .|:|          
  Rat   132 GAFLPPHQGFHRFLGIPYSHDQGPCQNLTCFPPDITCSGGCDQGLVPIPLLANLTVEAQPPWLPG 196

  Fly   155 ---RMKEYARQFLKQAKDEKKPFFLMVGFHDPHRCGHITPQFG--EFCERWGSGEEGMGSIPDWK 214
               |...::|..:..|:.:.:||||....|..|     .|||.  .|.:|.|.|..|        
  Rat   197 LEARYVSFSRDLMADAQRQGRPFFLYYASHHTH-----YPQFSGQSFTKRSGRGPFG-------- 248

  Fly   215 PIYYDWRNLDVPAWLPDTDVVRQELAAQYMTISRLDQGVGLMLKELEAAGVADQTLVIYTSDNGP 279
                                         .::..||..||.::..:...|:..:||||:|:||||
  Rat   249 -----------------------------DSLMELDGAVGALMTAVGDLGLLGETLVIFTADNGP 284

  Fly   280 PF----PGGRTNL--------YEHGIRSPLIISSPNKEDRH------HEATAAMVSLLDIYPSVM 326
            ..    .||.:.|        :|.|:|.|.::..|.    |      ||    :.|.||:.|::.
  Rat   285 ELMRMSDGGCSGLLRCGKGTTFEGGVREPALVYWPG----HITPGVTHE----LASSLDLLPTLA 341

  Fly   327 DALQIPRPNDTKIVGRSILPVL-------REE----PPIKESDSVFGSHSYHEVTMAYPMRMVRN 380
            .....|.||.| :.|..|.|:|       |..    ||.  .|.:.|..:            |||
  Rat   342 ALTGAPLPNIT-LDGVDISPLLLGTGKSPRNSVFFYPPF--PDEIHGVFA------------VRN 391

  Fly   381 RRYKLIHNINYWADFPIDQDFYTSPTFQQILNATLRKQTLPWYRSLLQYYQRPEWELYDIKTDPL 445
            .:||    .:::.......|....|........|..:..|                |||:..||.
  Rat   392 GKYK----AHFFTQGSAHSDTTPDPACHAANRLTAHEPPL----------------LYDLSKDPG 436

  Fly   446 ERFNLAD-------------------KAKYNGTLKQLREQLFDWQVATKDPW-------RCAPHA 484
            |.:||.|                   ||:|:..:.....|:    ...:||.       .|.|| 
  Rat   437 ENYNLLDSTEEVSPEALQALKHIELLKAEYDAAMTFSPSQI----AKGEDPALQICCQPSCTPH- 496

  Fly   485 VLQEQGVYKDQPVC 498
                       |||
  Rat   497 -----------PVC 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 133/561 (24%)
SGSH 22..471 CDD:293751 130/550 (24%)
ArsaNP_001030105.2 AslA 17..470 CDD:225661 131/544 (24%)
ALP_like 20..503 CDD:304875 139/588 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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