DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and Arse

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001041350.1 Gene:Arse / 310326 RGDID:1304917 Length:611 Species:Rattus norvegicus


Alignment Length:512 Identity:121/512 - (23%)
Similarity:173/512 - (33%) Gaps:181/512 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 NVLLLLADDAGF-ESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVSSCSPSRSQLLTGQAGHSSG 85
            |.|:::|||.|. :.|.|.|...:|||:|.||:.|:.......:.|.|:|||:..|||:....||
  Rat    36 NFLIIMADDLGIGDLGCYGNTSIRTPNIDRLAEDGVRLTQYLAAESVCTPSRAAFLTGRYPIRSG 100

  Fly    86 MYGLHQGVHNFNVLPDTGSLP----NLIRDQSGGRILSGIIGKKHVGAANNFRFDFEQTEEQHSI 146
            |.. ..|..........|.||    ...|...|...::|::||.|:|.:.....|.    ..|.:
  Rat   101 MTS-GNGHRVLQWAAGAGGLPPKEITFARILQGQGYVTGLVGKWHLGLSCRTVSDL----CHHPL 160

  Fly   147 NQIGRNITRMKEYARQFLKQAKDEKKPFFLMVGFHDPHRCGHITPQFGEFC------------ER 199
            |.                              |||  |..|......|: |            ||
  Rat   161 NH------------------------------GFH--HFLGLPLGMMGD-CAGAEPSEKRAGLER 192

  Fly   200 --------------------WGSGEEGMGSIPD-WKP-----------IY-------------YD 219
                                ||   .|.|..|. |.|           |:             ||
  Rat   193 RLRGAGRALAAVAVAIAALAWG---RGRGLAPACWAPWAAIALGAVAAIFEAGSYVVGGAVARYD 254

  Fly   220 ---WRNLDV-----------PAWLPDT-DVVRQELAAQYM------------------------- 244
               .||..|           |..|.:. |.:|:...|.::                         
  Rat   255 CFLMRNATVTQQPLQLDHVTPLLLREAKDFLRRHRHAPFLLFLSLLHTHTPLVTSPEFRGRSAHG 319

  Fly   245 ----TISRLDQGVGLMLKELEAAGVADQTLVIYTSDNGP----------------PFPGGR-TNL 288
                .:..:|..||.:|:.||..|:.|.|||.:|||||.                .|.||: ...
  Rat   320 RYGDNVEEMDWVVGQILEVLEHEGLTDSTLVHFTSDNGAWLEAQAGGEQLGGSNGVFRGGKGMGG 384

  Fly   289 YEHGIRSPLIISSPNKEDRHHEATAAMVSLLDIYPSVMDALQIPRPNDTKIVGRSILPVLREEPP 353
            :|.|||.|.:...|....| .......|||:|::|:|:.......|:|.:|.||.:||:||.|. 
  Rat   385 WEGGIRVPGVFRWPGVLPR-GRVLDQPVSLMDVFPTVVRLGGGVLPSDREIDGRDLLPLLRGET- 447

  Fly   354 IKESDSVFGSHSYHEVTMAYPMRMVRNRRYKLIHNINYWADFPIDQDFYTSPTFQQI 410
                     .||.|||.:.|....:...|:....:...|      :..:.:|||..:
  Rat   448 ---------WHSAHEVLLHYCEVFLHAVRWVQRDSGQVW------KAHFVTPTFDPL 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 121/512 (24%)
SGSH 22..471 CDD:293751 121/512 (24%)
ArseNP_001041350.1 AslA 31..541 CDD:225661 121/512 (24%)
ALP_like 34..531 CDD:304875 121/512 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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