DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sgsh and Arsg

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001041342.1 Gene:Arsg / 303631 RGDID:1306571 Length:526 Species:Rattus norvegicus


Alignment Length:534 Identity:123/534 - (23%)
Similarity:196/534 - (36%) Gaps:188/534 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LQWIFTLWLIAGCSAGPQ-NVLLLLADDAGF-ESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVS 66
            |.:.|..:.|:|.:..|: |::::||||.|: :.||...:...|.|||.:|..|:.|.:...:.|
  Rat    18 LLYPFVDFSISGETRAPRPNIVIILADDMGWGDLGANWAETKDTTNLDKMASEGMRFVDFHAAAS 82

  Fly    67 SCSPSRSQLLTGQAGHSSGMYGLHQGVHNFNVLPDTGSLP------NLIRDQSGGRILSGIIGKK 125
            :|||||:.||||:.|..:|:      .|||.| ...|.||      ..:..|:|  .::.:|||.
  Rat    83 TCSPSRASLLTGRLGLRNGV------THNFAV-TSVGGLPLNETTLAEVLQQAG--YVTAMIGKW 138

  Fly   126 HVGAANNFRFDFEQTEEQHSI---NQIG----------------------RNITR---------- 155
            |:|...::...|...:....|   |.:|                      ||..|          
  Rat   139 HLGHHGSYHPSFRGFDYYFGIPYSNDMGCTDNPGYNYPPCPACPQSDGRWRNPDRDCYTDVALPL 203

  Fly   156 ----------------MKEYAR---QFLKQAKDEKKPFFLMVGFHDPHRCGHITPQFGEFCERWG 201
                            .::||.   :|::||....:||.|.||....|....:||....      
  Rat   204 YENLNIVEQPVNLSGLAQKYAERAVEFIEQASTSGRPFLLYVGLAHMHVPLSVTPPLAN------ 262

  Fly   202 SGEEGMGSIPDWKPIYYDWRNLDVPAWLPDTDVVRQELAAQYMTISRLDQGVGLMLKELEAAGVA 266
                     |..:.:|                  |..|......:.::...|..:.||       
  Rat   263 ---------PQSQRLY------------------RASLQEMDSLVGQIKDKVDHVAKE------- 293

  Fly   267 DQTLVIYTSDNGP------------PFPG----------GRTNLYEHGIRSPLIISSPNKEDRHH 309
             .||:.:..||||            ||.|          .:...:|.|.|.|.:...|.:...:.
  Rat   294 -NTLLWFAGDNGPWAQKCELAGSMGPFSGLWQTHQGGSPAKQTTWEGGHRVPALAYWPGRVPVNV 357

  Fly   310 EATAAMVSLLDIYPSVMDALQIPRPNDTKIVGRSILPVLREEPPIKESDSVFG-SHSYHEVTMAY 373
            .:| |::|||||:|:|:           .:.|.| ||..|:...:..|:.:|| |.:.|.| :.:
  Rat   358 TST-ALLSLLDIFPTVI-----------ALAGAS-LPPNRKFDGVDVSEVLFGKSQTGHRV-LFH 408

  Fly   374 P----------MRMVRNRRYK------------------------LIHNINYWA--DFPIDQDFY 402
            |          ::.||..|||                        ||.|:...|  ..|:.:.  
  Rat   409 PNSGAAGEYGALQTVRLDRYKAFYITGGAKACDGGVGPEQHHVSPLIFNLEDDAAESSPLQKG-- 471

  Fly   403 TSPTFQQILNATLR 416
             ||.:|::|....|
  Rat   472 -SPEYQELLPKVTR 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 119/521 (23%)
SGSH 22..471 CDD:293751 118/515 (23%)
ArsgNP_001041342.1 ARSG 35..469 CDD:293780 113/497 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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