DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and Sgsh

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_061292.2 Gene:Sgsh / 27029 MGIID:1350341 Length:502 Species:Mus musculus


Alignment Length:504 Identity:266/504 - (52%)
Similarity:338/504 - (67%) Gaps:20/504 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 TLWLIAG-CSAGPQNVLLLLADDAGFESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVSSCSPSR 72
            |:.|:.| |.|..:||||::|||.|||||.|.|....||:||||::..|:|.|||||||||||||
Mouse    10 TILLVLGLCGAHSRNVLLIVADDGGFESGVYNNTAIATPHLDALSRHSLIFRNAFTSVSSCSPSR 74

  Fly    73 SQLLTGQAGHSSGMYGLHQGVHNFNVLPDTGSLPNLIRDQSGGRILSGIIGKKHVGAANNFRFDF 137
            :.||||...|.:|||||||.||:||......||| |:.:|:|.|  :|||||||||....:.|||
Mouse    75 ASLLTGLPQHQNGMYGLHQDVHHFNSFDKVQSLP-LLLNQAGVR--TGIIGKKHVGPETVYPFDF 136

  Fly   138 EQTEEQHSINQIGRNITRMKEYARQFLKQAKDEKKPFFLMVGFHDPHRCGHITPQFGEFCERWGS 202
            ..|||..|:.|:||||||:|:..::|| |.:|: :||||.|.|||||||||..||:|.|||::|:
Mouse   137 AFTEENSSVMQVGRNITRIKQLVQKFL-QTQDD-RPFFLYVAFHDPHRCGHSQPQYGTFCEKFGN 199

  Fly   203 GEEGMGSIPDWKPIYYDWRNLDVPAWLPDTDVVRQELAAQYMTISRLDQGVGLMLKELEAAGVAD 267
            ||.|||.||||.|..||.:::.||.::|||...|.:|||||.||.|:||||||:|:||..|||.:
Mouse   200 GESGMGYIPDWTPQIYDPQDVMVPYFVPDTPAARADLAAQYTTIGRMDQGVGLVLQELRGAGVLN 264

  Fly   268 QTLVIYTSDNGPPFPGGRTNLYEHGIRSPLIISSPNKEDRHHEATAAMVSLLDIYPSVMDALQIP 332
            .||:|:|||||.|||.||||||..|...||::|||....|..:.:.|.|||||:.|:::|...||
Mouse   265 DTLIIFTSDNGIPFPSGRTNLYWPGTAEPLLVSSPEHPQRWGQVSDAYVSLLDLTPTILDWFSIP 329

  Fly   333 RPN-------DTKIVGRSILPVLREEPPIKESDSVFGSHSYHEVTMAYPMRMVRNRRYKLIHNIN 390
            .|:       ..::.|||:||.|..||...   :||.|.|:|||||:||||.|.::.::||||::
Mouse   330 YPSYAIFGSKTIQLTGRSLLPALEAEPLWA---TVFSSQSHHEVTMSYPMRSVYHQNFRLIHNLS 391

  Fly   391 YWADFPIDQDFYTSPTFQQILNATLRKQTLPWYRSLLQYYQRPEWELYDIKTDPLERFNLADKAK 455
            :...||||||||.|||||.:||.|...:...||:.|.:||.|..||||||..||.|..|||....
Mouse   392 FKMPFPIDQDFYVSPTFQDLLNRTTTGRPTGWYKDLHRYYYRERWELYDISRDPRETRNLAADPD 456

  Fly   456 YNGTLKQLREQLFDWQVATKDPWRCAPHAVLQEQGVYKDQPVCLTLGHE 504
            ....|:.|:.||..||..|.|||.|||..||:|    |..|.|..|.:|
Mouse   457 LAQVLEMLKAQLVKWQWETHDPWVCAPDGVLEE----KLTPQCRPLHNE 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 248/465 (53%)
SGSH 22..471 CDD:293751 244/455 (54%)
SgshNP_061292.2 AslA 20..464 CDD:225661 241/450 (54%)
SGSH 24..472 CDD:293751 243/454 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167841029
Domainoid 1 1.000 354 1.000 Domainoid score I991
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H167
Inparanoid 1 1.050 510 1.000 Inparanoid score I1310
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG63124
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007960
OrthoInspector 1 1.000 - - oto93071
orthoMCL 1 0.900 - - OOG6_107938
Panther 1 1.100 - - LDO PTHR43108
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5386
SonicParanoid 1 1.000 - - X5904
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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