DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and GALNS

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_011521284.1 Gene:GALNS / 2588 HGNCID:4122 Length:581 Species:Homo sapiens


Alignment Length:534 Identity:127/534 - (23%)
Similarity:195/534 - (36%) Gaps:166/534 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 TLWLIAGCSAGPQNVLLLLADDAGF---ESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVSSCSP 70
            |.|...|.:....:     |.||..   :.|.|.....:|||||.:|..||||.|.:::...|||
Human    28 TAWADRGAAPSCTH-----AGDAEMGWGDLGVYGEPSRETPNLDRMAAEGLLFPNFYSANPLCSP 87

  Fly    71 SRSQLLTGQAGHSSGMYGLHQGVHN-------FNVLPDTGS-LPNLIRDQSGGRILSGIIGKKHV 127
            ||:.||||:....:|.|..:....|       ...:||:.. ||.|:: ::|  .:|.|:||.|:
Human    88 SRAALLTGRLPIRNGFYTTNAHARNAYTPQEIVGGIPDSEQLLPELLK-KAG--YVSKIVGKWHL 149

  Fly   128 GAANNFR-----FD---------FEQTEEQHSIN--------QIGR--------------NITRM 156
            |....|.     ||         |...:.:...|        .:||              |:|::
Human   150 GHRPQFHPLKHGFDEWFGSPNCHFGPYDNKARPNIPVYRDWEMVGRYYEEFPINLKTGEANLTQI 214

  Fly   157 -KEYARQFLK-QAKDEKKPFFLMVGFHDPHRCGHITPQFGEFCERWGSGEEGMGSIPDWKPIYYD 219
             .:.|..|:| ||:..  ||||.......|...:.:..|      .|:.:.|...          
Human   215 YLQEALDFIKRQARHH--PFFLYWAVDATHAPVYASKPF------LGTSQRGRYG---------- 261

  Fly   220 WRNLDVPAWLPDTDVVRQELAAQYMTISRLDQGVGLMLKELEAAGVADQTLVIYTSDNGP----- 279
                         |.||:           :|..:|.:|:.|:...|||.|.|.:|||||.     
Human   262 -------------DAVRE-----------IDDSIGKILELLQDLHVADNTFVFFTSDNGAALISA 302

  Fly   280 --------PFPGGRTNLYEHGIRSPLIISSPNKEDRHHEATAAMV-----SLLDIYPSVMDALQI 331
                    ||..|:...:|.|:|.|.:...|.      ..||..|     |::|::.:.:....:
Human   303 PEQGGSNGPFLCGKQTTFEGGMREPALAWWPG------HVTAGQVSHQLGSIMDLFTTSLALAGL 361

  Fly   332 PRPNDTKIVGRSILPVLRE----EPPI--KESDSV----FGSHSYHEVTMAYPMRMVRNRRYKLI 386
            ..|:|..|.|.::||.|.:    :.||  ...|::    .|.|..|..|..              
Human   362 TPPSDRAIDGLNLLPTLLQGRLMDRPIFYYRGDTLMAATLGQHKAHFWTWT-------------- 412

  Fly   387 HNINYWADFPIDQDFYTSPTFQQILNATLRKQT-LPWYRSLLQYYQRPEWELYDIKTDPLERFNL 450
               |.|.:|....||........:....|...| ||.              ::.:..||.|||.|
Human   413 ---NSWENFRQGIDFCPGQNVSGVTTHNLEDHTKLPL--------------IFHLGRDPGERFPL 460

  Fly   451 A-DKAKYNGTLKQL 463
            : ..|:|...|.::
Human   461 SFASAEYQEALSRI 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 124/526 (24%)
SGSH 22..471 CDD:293751 124/521 (24%)
GALNSXP_011521284.1 GALNS 46..500 CDD:293776 121/511 (24%)
AslA 46..489 CDD:225661 121/511 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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