DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sgsh and Arsb

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_254278.1 Gene:Arsb / 25227 RGDID:2158 Length:528 Species:Rattus norvegicus


Alignment Length:599 Identity:136/599 - (22%)
Similarity:211/599 - (35%) Gaps:228/599 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IFTLW-LIAGCSAGPQNVLLLLADDAGFESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVSSCSP 70
            :..|| ..|..:|.|.:|:.:||||.|:....:.....:||:|||||..|::.:|.:.. ..|:|
  Rat    25 LLLLWPARASDAAPPPHVVFVLADDLGWNDLGFHGSVIRTPHLDALAAGGVVLDNYYVQ-PLCTP 88

  Fly    71 SRSQLLTGQAGHSSGMYGLHQGVHNF-------NVLP-DTGSLPNLIRDQSGGRILSGIIGKKHV 127
            ||||||||:       |.:|.|:.::       |.:| |...||.|::|..   ..:.::||.|:
  Rat    89 SRSQLLTGR-------YQIHMGLQHYLIMTCQPNCVPLDEKLLPQLLKDAG---YATHMVGKWHL 143

  Fly   128 GAANNFR-------------FDFEQTEEQHSINQIGR-----NITR-----------MKEY---- 159
            |.   :|             |.:....|.:..::...     |.||           .|||    
  Rat   144 GM---YRKECLPTRRGFDTYFGYLLGSEDYYTHEACAPIECLNGTRCALDLRDGEEPAKEYTDIY 205

  Fly   160 -ARQFLKQA------KDEKKPFFLMVGF---HDPHRCGHITPQFGEFCERWGSGEEGMGSIPDWK 214
             ...|.|:|      ...:||.||.:.|   |||                               
  Rat   206 STNIFTKRATTLIANHPPEKPLFLYLAFQSVHDP------------------------------- 239

  Fly   215 PIYYDWRNLDVP-AWLPDTDVVRQELAAQYM-TISRLDQGVGLMLKELEAAGVADQTLVIYTSDN 277
                    |.|| .::...|.::.:....|. .:|.||:.||.:.|.|::.|:.:.|::|:::||
  Rat   240 --------LQVPEEYMEPYDFIQDKHRRIYAGMVSLLDEAVGNVTKALKSRGLWNNTVLIFSTDN 296

  Fly   278 GP---------PFPGGRTNLYEHGIRSPLIISSP--------NKEDRH----------------H 309
            |.         |..|.:..|:|.|||....::||        ::|..|                |
  Rat   297 GGQTRSGGNNWPLRGRKGTLWEGGIRGAGFVASPLLKQKGVKSRELMHITDWLPTLVNLAGGSTH 361

  Fly   310 -----------------EATAAMVSLLDIYPSVMDALQIPRPNDTKIVGRSILPVLREEPPIKES 357
                             ..:..:..||:|.|...|.|..|        |::..|...:..|::. 
  Rat   362 GTKPLDGFDVWETISEGSPSPRVELLLNIDPDFFDGLPCP--------GKNTTPEKNDSFPLEH- 417

  Fly   358 DSVFGSHSYHEVTMAYPMRMVRNRRYKLI---HNINYWADFPIDQDF-----YTSPTFQQILNAT 414
             |.|.: |.|        ..:|.:.:||:   ....||...|...:.     ..|||        
  Rat   418 -SAFNT-SIH--------AGIRYKNWKLLTGYPGCGYWFPPPSQSNISEVPSVDSPT-------- 464

  Fly   415 LRKQTLPWYRSLLQYYQRPEWELYDIKTDPLERF-----------NLADKAKYNGTLKQLREQLF 468
               :||              | |:||..||.||.           ||..:.:|      ..|...
  Rat   465 ---KTL--------------W-LFDINRDPEERHDVSREHPHIVQNLLSRLQY------YHEHSV 505

  Fly   469 DWQVATKDPWRCAP 482
            .......|| ||.|
  Rat   506 PSYFPPLDP-RCDP 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 128/580 (22%)
SGSH 22..471 CDD:293751 126/570 (22%)
ArsbNP_254278.1 AslA 36..484 CDD:225661 124/545 (23%)
4-S 40..483 CDD:293753 122/540 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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