DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and Arsb

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_033842.3 Gene:Arsb / 11881 MGIID:88075 Length:534 Species:Mus musculus


Alignment Length:605 Identity:138/605 - (22%)
Similarity:221/605 - (36%) Gaps:217/605 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LQWIFTLWLIAGCSAG--PQNVLLLLADDAGFESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVS 66
            ||.:..|...|..|..  |.:|:.:||||.|:....:.....:||:|||||..|::.:|.:.. .
Mouse    27 LQLLLLLLSPARASGATQPPHVVFVLADDLGWNDLGFHGSVIRTPHLDALAAGGVVLDNYYVQ-P 90

  Fly    67 SCSPSRSQLLTGQAGHSSGMYGLHQGVHNFNVLP--------DTGSLPNLIRDQSGGRILSGIIG 123
            .|:|||||||||:       |.:|.|:.::.::.        |...||.|:::..   ..:.::|
Mouse    91 LCTPSRSQLLTGR-------YQIHLGLQHYLIMTCQPSCVPLDEKLLPQLLKEAG---YATHMVG 145

  Fly   124 KKHVGAANN------------FRF-----DFEQTEEQHSINQIGRNITR-----------MKEY- 159
            |.|:|....            |.:     |:...|....|..:  |.||           .||| 
Mouse   146 KWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYTHEACAPIESL--NGTRCALDLRDGEEPAKEYN 208

  Fly   160 ----ARQFLKQA------KDEKKPFFLMVGF---HDPHRCGHITPQFGEFCERWGSGEEGMGSIP 211
                ...|.|:|      ...:||.||.:.|   |||.:    .|:  |:.|.:|..:       
Mouse   209 NIYSTNIFTKRATTVIANHPPEKPLFLYLAFQSVHDPLQ----VPE--EYMEPYGFIQ------- 260

  Fly   212 DWKPIYYDWRNLDVPAWLPDTDVVRQELAAQYMTISRLDQGVGLMLKELEAAGVADQTLVIYTSD 276
                                 |..|:..|..   :|.:|:.||.:.|.|::.|:.:.|:.|:::|
Mouse   261 ---------------------DKHRRIYAGM---VSLMDEAVGNVTKALKSHGLWNNTVFIFSTD 301

  Fly   277 NGP---------PFPGGRTNLYEHGIRSPLIISSPNKEDRHHEATAAMVSLLDIYPSVMDALQIP 332
            ||.         |..|.:..|:|.|||....::||..:.:..::...| .:.|..|:::| |...
Mouse   302 NGGQTRSGGNNWPLRGRKGTLWEGGIRGTGFVASPLLKQKGVKSRELM-HITDWLPTLVD-LAGG 364

  Fly   333 RPNDTKIVGRSILPVLREEPPIKESDSVFGSHSYHEVTMAYPMRMVRNRRYKLIHNINYWADFPI 397
            ..|.||              |:.      |.:.:..::..:|     :.|.:|:||        |
Mouse   365 STNGTK--------------PLD------GFNMWKTISEGHP-----SPRVELLHN--------I 396

  Fly   398 DQDFYTS--------------------PTFQQILNATLRKQTLPWYRSLLQ------YYQRPE-- 434
            ||||:..                    ..|...::|.:|.:.  |  .||.      |:..|.  
Mouse   397 DQDFFDGLPCPGKNMTPAKDDSFPLEHSAFNTSIHAGIRYKN--W--KLLTGHPGCGYWFPPPSQ 457

  Fly   435 ----------------WELYDIKTDPLERF-----------NLADKAKYNGTLKQLREQLFDWQV 472
                            | |:||..||.||.           ||..:.:|      ..|.......
Mouse   458 SNVSEIPPVDPPTKTLW-LFDINQDPEERHDVSREHPHIVQNLLSRLQY------YHEHSVPSHF 515

  Fly   473 ATKDPWRCAPHAVLQEQGVY 492
            ...|| ||.|    :..||:
Mouse   516 PPLDP-RCDP----KSTGVW 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 127/574 (22%)
SGSH 22..471 CDD:293751 125/562 (22%)
ArsbNP_033842.3 AslA 42..490 CDD:225661 122/537 (23%)
4-S 46..489 CDD:293753 121/532 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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