DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and arsi

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_002940132.1 Gene:arsi / 100487216 XenbaseID:XB-GENE-6046190 Length:575 Species:Xenopus tropicalis


Alignment Length:641 Identity:128/641 - (19%)
Similarity:224/641 - (34%) Gaps:238/641 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 FLQWIFTLWLIAGCSAG------------PQNVLLLLADDAGFESGAYLNKFCQTPNLDALAKRG 55
            ::.|.:....:.|.|.|            |.:::.:|.||.||....|.....|||.||.||..|
 Frog    19 YMSWDWVKPAVLGDSPGDEPAKLQGTPSRPPHIIFILTDDQGFHDVGYHGSDIQTPTLDRLAAEG 83

  Fly    56 LLFNNAFTSVSSCSPSRSQLLTG---------------------------------QAGHSSGMY 87
            :...|.:.. ..|:||||||:||                                 :||:|:.|.
 Frog    84 VKLENYYIQ-PICTPSRSQLITGRYQIHTGLQHSIIRPRQPNCLPLHQVTLPQKLQEAGYSTHMV 147

  Fly    88 G-LHQGVHNFNVLPD-----------TGSLPNLIRDQSGGRILSGIIGKKHVGAANNFRFDFEQT 140
            | .|.|.:....||.           ||::.....|...|   .|:.|           ||..:.
 Frog   148 GKWHLGFYKKECLPTRRGFDTFLGSLTGNVDYYSYDNCDG---PGVCG-----------FDLHEG 198

  Fly   141 EEQHSINQIGRNITRMKEYARQF--LKQAKDEKKPFFLMVGFHDPHRCGHITPQFGEFCERWGSG 203
            |.. :.:|.|:..|.:  ||::.  :..:.:.::|.|:.|.|...|     ||            
 Frog   199 ENV-AWDQAGKYSTLL--YAQRVNQILASHNPQQPIFIYVAFQAVH-----TP------------ 243

  Fly   204 EEGMGSIPDWKPIYYDWRNLDVPAWLPDTDVVRQELAAQYMTISRLDQGVGLMLKELEAAGVADQ 268
                  :...:...|.:|.:.        :|.|::.||.   ::.:|..|..:.:.|:..|....
 Frog   244 ------LQSPREYIYPYRGMG--------NVARRKYAAM---VTCMDAAVKNITRALKKYGYYSN 291

  Fly   269 TLVIYTSDNGP---------PFPGGRTNLYEHGIR------SPLIISSPNKEDRHHEATAAMVSL 318
            ::::::||||.         |..|.:...:|.|:|      ||||     |:.|  ..:.|::.:
 Frog   292 SVIVFSSDNGGQTFSGGSNWPLRGRKGTYWEGGVRGLGFVHSPLI-----KKKR--RTSRALMHI 349

  Fly   319 LDIYP-----------------------SVMDALQIPRPNDTKIVGRSILPV--LREEPPIKESD 358
            .|.||                       ::.:..:.||   |:|: .:|.|:  |.:...::|..
 Frog   350 TDWYPTLVKLAGGNISSAEGLDGYDVWGAISEGKESPR---TEIL-HNIDPLYNLAKSGSLEEGQ 410

  Fly   359 SVFGSHSYHEVTMAYPMRMVRNRRYKLIHNINYWADFPIDQDFYTSPTFQQILNATLRKQTL--- 420
            .|:.:         .....:|.:.:||:.....::|:                   :..|||   
 Frog   411 GVWNT---------AVQASIRVKDFKLLTGDPGYSDW-------------------IPPQTLTNF 447

  Fly   421 --PWYRSLLQYY----QRPEWELYDIKTDPLERFNLADK------------AKYNGTLKQLREQL 467
              .|:.  |:.:    ::..| |::|..||.||.:|:..            ..||.|...:|...
 Frog   448 PGSWWN--LERHTDGARKSLW-LFNITADPFERHDLSSSKPEVVKELLIRLGYYNRTAIPVRYPA 509

  Fly   468 FD-----------WQVATKDPWRCAPHAVLQEQGVYKDQPVCLTLGHEALQRPKRR 512
            .|           |     .||........:|..:.|        |.|.::.||::
 Frog   510 EDPRGNPELNGGAW-----GPWASEDDDDEEENWIGK--------GGEYIKNPKKK 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 118/589 (20%)
SGSH 22..471 CDD:293751 114/567 (20%)
arsiXP_002940132.1 4-S 49..481 CDD:293753 108/525 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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