DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and galns

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_002933701.2 Gene:galns / 100485376 XenbaseID:XB-GENE-1000591 Length:520 Species:Xenopus tropicalis


Alignment Length:573 Identity:131/573 - (22%)
Similarity:211/573 - (36%) Gaps:172/573 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LIAGCSAGPQNVLLLLADDAGF-ESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVSSCSPSRSQL 75
            ::.|.:....|:||||.||.|: :.|.:.....:|||||.:|..|:||.|.:|:...|||||:.|
 Frog    19 VLGGMNGTRPNILLLLMDDMGWGDLGVFGEPSRETPNLDKMASEGMLFPNFYTANPLCSPSRAAL 83

  Fly    76 LTGQAGHSSGMYGLHQGVHN-------FNVLPDTGSL-PNLIRDQSGGRILSGIIGKKHVG---- 128
            |||:....:|.|..:....|       ...:||:..| |.|:: ::|  .::.||||.|:|    
 Frog    84 LTGRLPIRNGFYTTNSHARNAYTPQEIMGGIPDSEVLFPELLK-KAG--YVNKIIGKWHLGHRPS 145

  Fly   129 ------------AANNFRFDFEQTEEQHSI------NQIGR--------------NITRM-KEYA 160
                        .:.|..|.....:::.:|      :.:||              |:|:: .:.|
 Frog   146 YHPLRRGFDEWFGSPNCHFGPYDNKQRPNIPVYRDWDMVGRYYEDFNIDHKTGESNLTQIYLQEA 210

  Fly   161 RQFLKQAKDEKKPFFLMVGFHDPHRCGHITPQFGEFCERWGSGEEGMGSIPDWKPIYYDWRNLDV 225
            .:|:.:...:::||||.......|...:.:..|      .|:...|:..                
 Frog   211 LEFINRQAGDQQPFFLYWSIDATHAPVYASRPF------LGTSRRGLYG---------------- 253

  Fly   226 PAWLPDTDVVRQELAAQYMTISRLDQGVGLMLKELEAAGVADQTLVIYTSDNGP----------- 279
                   |.||:           :|..:|.:|..|....:...|.|.:|||||.           
 Frog   254 -------DAVRE-----------IDFSIGKILGLLNQKDIIKDTFVFFTSDNGAALISAPMQGGS 300

  Fly   280 --PFPGGRTNLYEHGIRSPLIISSPNKEDRHH----EATAAMVSLLDIYPSVMDALQIPRPNDTK 338
              ||..|:...:|.|:|.|.|...|.     |    :.:..:.|::|::.:.:....:..|.|..
 Frog   301 NGPFLCGKQTTFEGGMRVPGIAWWPG-----HVAPGQVSYQLGSIMDLFTTSLSLAGVEIPKDRA 360

  Fly   339 IVGRSILPVLRE----EPPI-----KESDSV-FGSHSYHEVTMAYPMRMVRNRRYKLIHNINYWA 393
            |.|..:.||:.|    |.||     .|..:| .|.|..|..|.:                 |.|.
 Frog   361 IDGIDLSPVILESEETERPIFYYRGNELMAVRLGQHKAHYWTWS-----------------NSWE 408

  Fly   394 DFPIDQDFYTSPTFQQILNATLRKQTLPWYRSLLQYYQRPEWELYDIKTDPLE------------ 446
            :  :.|.....|. |.|...|...|.......||.:..|...|.|.|.....|            
 Frog   409 E--LSQGINFCPG-QNITGVTTHVQVEHSINPLLFHLGRDPGEKYSISVLSTEYEAALSRISPVV 470

  Fly   447 ------------RFNLADKAKYNGT---LKQLREQLFDWQVATKDPWRCA-PH 483
                        :.|:.|.|..|.:   .::|.:.|...|   .:||:|. ||
 Frog   471 QQHRNSMVPGEPQLNVCDLAVMNWSPPGCEKLGKCLTPPQ---SNPWKCVWPH 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 125/558 (22%)
SGSH 22..471 CDD:293751 124/548 (23%)
galnsXP_002933701.2 GALNS 27..492 CDD:293776 121/532 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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