DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and arsia

DIOPT Version :9

Sequence 1:NP_650760.1 Gene:Sgsh / 42266 FlyBaseID:FBgn0038660 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_002664306.1 Gene:arsia / 100329483 ZFINID:ZDB-GENE-140106-141 Length:558 Species:Danio rerio


Alignment Length:535 Identity:106/535 - (19%)
Similarity:192/535 - (35%) Gaps:178/535 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 NVLLLLADDAGFESGAYLNKFCQTPNLDALAKRGLLFNNAFTSVSSCSPSRSQLLTGQAGHSSGM 86
            :::.::.||.||....|.|....||.||.||..|:...|.:.. ..|:|||||.:||:       
Zfish    39 HIIFIMTDDQGFNDIGYHNTDIHTPTLDRLAAAGVKLENYYIQ-PICTPSRSQFITGR------- 95

  Fly    87 YGLHQGV-HNF------NVLP-DTGSLPNLIRDQSGGRILSGIIGKKHVG-----------AANN 132
            |.:|.|: |:.      :.|| ...:||.  |.|..| ..:.::||.|:|           ..|.
Zfish    96 YQIHTGLQHSIIRSRQPSCLPFGLRTLPQ--RLQEAG-YATHMVGKWHLGFYKRDCLPTRRGFNT 157

  Fly   133 F----------------------RFDFEQTEEQHSINQIGRNITRM-KEYARQFLKQAKDEKKPF 174
            :                      .||... .|:.:..|.||..|.: .:..|:.|.......:|.
Zfish   158 YFGSLTGSVDYYTYKSCDGPKVCGFDLHD-GERVAWGQGGRYSTHLYTQRVRKILAAHDPSSQPL 221

  Fly   175 FLMVGFHDPHRCGHITPQFGEFCERWGSGEEGMGSIPDWKPIYYDWRNLDVPAWLPDTDVVRQEL 239
            |:.:.|...|     ||                  :...|...|.:|.:.        ::.|::.
Zfish   222 FIFLSFQAVH-----TP------------------LQSPKEYVYPYRRMG--------NMFRRKY 255

  Fly   240 AAQYMTISRLDQGVGLMLKELEAAGVADQTLVIYTSDNG--PPFPG------GRTNLY-EHGIRS 295
            |..   :|.:|:.|..:...|...|....|::.:::|||  |.|.|      ||...| |.|:|.
Zfish   256 AGM---VSAVDEAVRNVTYALRKYGYYKNTVIFFSTDNGGQPLFGGSNWPLRGRKGTYWEGGVRG 317

  Fly   296 PLIISSPNKEDRHHEATAAMVSLLDIYPSVMDALQIPRPNDTKIVGRSILPVLREEPPIKESDSV 360
            ...:.||... |....:.|::.:.|.||::|           ::.|.:          :.:::.:
Zfish   318 IGFVHSPLLR-RRRRVSRALIHITDWYPTLM-----------RLAGGN----------VSQAEGL 360

  Fly   361 FGSHSYHEVTMAYPMRMVRNRRYKLIHNINYWADFPIDQDFYTSPTFQQILNATLRKQTLPWYRS 425
            .|...:..::..     ..:.|::::|||:              |.:....:.:|:.....|..:
Zfish   361 DGFDMWDTISDG-----KESPRFEILHNID--------------PLYNAARHGSLKNGYGIWNTA 406

  Fly   426 LLQYYQRPEWE--------------------------------------LYDIKTDPLERFNLAD 452
            :....:..:|:                                      |:::..||.|||:||:
Zfish   407 VQAAVRVGDWKLLTGNPGYGDWIPPQMLGNFPESWWSLERHTEAKKSLWLFNVADDPYERFDLAE 471

  Fly   453 KAKYNGTLKQLREQL 467
            :..  ..:|||..:|
Zfish   472 RRP--DVVKQLLARL 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_650760.1 AslA 17..476 CDD:225661 106/535 (20%)
SGSH 22..471 CDD:293751 106/535 (20%)
arsiaXP_002664306.1 AslA 37..471 CDD:225661 101/518 (19%)
4-S 38..470 CDD:293753 100/517 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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