DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh2 and opn6a

DIOPT Version :10

Sequence 1:NP_524398.1 Gene:Rh2 / 42261 FlyBaseID:FBgn0003248 Length:381 Species:Drosophila melanogaster
Sequence 2:NP_001073125.2 Gene:opn6a / 780836 ZFINID:ZDB-GENE-061201-30 Length:419 Species:Danio rerio


Alignment Length:325 Identity:87/325 - (26%)
Similarity:163/325 - (50%) Gaps:39/325 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 LVNPYW--------SRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVL 97
            :||..|        ||..|:......|:|::.|.:..:|..||.:|:::....:|...|.:.|.|
Zfish     9 VVNIPWRNNNFSLMSREPPLSDQGETIIGVYLLILGWLSWFGNSIVIFVLFRQRSTLQPTDYLTL 73

  Fly    98 NLAFSDFCMMA---SQSPVMIINFYYET-WVLGPLW-CDIYAGCGSLFGCVSIWSMCMIAFDRYN 157
            |||.||..:..   |:..:.|.|.:.:: :::..:| |.:......:||..||.::.:|:..|: 
Zfish    74 NLAVSDASISVFGYSRGILEIFNIFKDSGYIISSVWTCQVDGFFTLVFGLSSINTLTVISITRF- 137

  Fly   158 VIVKGINGTP-----MTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVPEGNLTACSIDYMTRMWN 217
              :||.:  |     :|..|..:.::|||:.|.||:..|::||.:|...|..| |.||::...::
Zfish   138 --IKGCH--PHKAHCITNSTVAVCVVFIWIGAFFWSAAPVLGWGSYTDRGYGT-CEIDWVKANYS 197

  Fly   218 P--RSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSSEDCDKSAEGK 280
            .  :||:|:..:|.:..|:.|:.:.|..||..|        ::...||...  ...|..:..|..
Zfish   198 TIHKSYIISIFIFCFLVPVLLMLFCYISIINTV--------KRGNAMNADG--DLSDRQRKIERD 252

  Fly   281 LAKVALTTISLWFMAWTPYLVICYFGLFKIDGLTPLTTIWGATFAKTSAVYNPIVY-GISHPKYR 344
            :..|::...:.:.:||:||.|:..:..:... :..||:|:...|||:::.|||::| |:| .|:|
Zfish   253 VTIVSIVICTAFILAWSPYAVVSMWSAWGFH-VPNLTSIFTRLFAKSASFYNPLIYFGLS-SKFR 315

  Fly   345  344
            Zfish   316  315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh2NP_524398.1 7tmA_photoreceptors_insect 59..347 CDD:320207 81/299 (27%)
TM helix 1 59..85 CDD:320207 7/25 (28%)
TM helix 2 92..118 CDD:320207 9/28 (32%)
TM helix 3 130..160 CDD:320207 7/29 (24%)
TM helix 4 171..191 CDD:320207 7/19 (37%)
TM helix 5 218..247 CDD:320207 9/30 (30%)
TM helix 6 276..306 CDD:320207 7/29 (24%)
TM helix 7 315..340 CDD:320207 11/25 (44%)
opn6aNP_001073125.2 None

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