DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh2 and opn4a

DIOPT Version :10

Sequence 1:NP_524398.1 Gene:Rh2 / 42261 FlyBaseID:FBgn0003248 Length:381 Species:Drosophila melanogaster
Sequence 2:NP_001122233.2 Gene:opn4a / 571624 ZFINID:ZDB-GENE-070111-2 Length:593 Species:Danio rerio


Alignment Length:398 Identity:128/398 - (32%)
Similarity:202/398 - (50%) Gaps:86/398 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 LPDMAHLVNPYWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNL 99
            :||.||..                 :|...|.:.|....||.:|:|.|..:::|||||||.::||
Zfish    70 VPDHAHYT-----------------IGAVILTVGITGMLGNFLVIYAFSRSRTLRTPANLFIINL 117

  Fly   100 AFSDFCMMASQSPVMIINFYYETWVLGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVK--- 161
            |.:||.|.|:|:|:......::.|:.|...|::||.||:|||..|:.::.:||.|||.||.:   
Zfish   118 AITDFLMCATQAPIFFTTSMHKRWIFGEKGCELYAFCGALFGICSMITLMVIAVDRYFVITRPLA 182

  Fly   162 --GINGTPMTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVPEGNLTACSIDYMTRMWNPRSYLIT 224
              |:    ::.|.:::.:|..|:.::.|::.|..|||||||||.||:|:.||||...:.|:|.:.
Zfish   183 SIGV----LSQKRALLILLVAWVYSLGWSLPPFFGWSAYVPEGLLTSCTWDYMTFTPSVRAYTML 243

  Fly   225 YSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSSEDCDK--SAEGKLAKVALT 287
            ..:||::.||.:|.|.|:||..::    :...|...|:|..:.|.|....:  ..|.|:||:||.
Zfish   244 LFIFVFFIPLIVIIYCYFFIFRSI----RTTNEAVGKINGDNKRDSMKRFQRLKNEWKMAKIALI 304

  Fly   288 TISLWFMAWTPY--LVICYFGLFKIDGLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEK 350
            .|.::.::|:||  :.:..|..:. |.|||......|..||.||::|||:|.|:|||||:.:.:.
Zfish   305 VILMYVISWSPYSTVALTAFAGYS-DFLTPYMNSVPAVIAKASAIHNPIIYAITHPKYRLAIAKY 368

  Fly   351 CP-----MCVFGNTDEPKPD-------------------------------------APASDTE- 372
            .|     :||      ||.|                                     :.|||:| 
Zfish   369 IPCLRLLLCV------PKRDLHSFHSSLMSTRRSTVTSQSSDMSGRFRRTSTGKSRLSSASDSES 427

  Fly   373 --TTSEAD 378
              |.:|||
Zfish   428 GWTDTEAD 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh2NP_524398.1 7tmA_photoreceptors_insect 59..347 CDD:320207 110/296 (37%)
TM helix 1 59..85 CDD:320207 8/25 (32%)
TM helix 2 92..118 CDD:320207 12/25 (48%)
TM helix 3 130..160 CDD:320207 15/29 (52%)
TM helix 4 171..191 CDD:320207 4/19 (21%)
TM helix 5 218..247 CDD:320207 11/28 (39%)
TM helix 6 276..306 CDD:320207 10/31 (32%)
TM helix 7 315..340 CDD:320207 11/24 (46%)
opn4aNP_001122233.2 7tmA_Melanopsin 76..365 CDD:320458 110/314 (35%)
TM helix 1 77..103 CDD:320458 8/42 (19%)
TM helix 2 110..136 CDD:320458 12/25 (48%)
TM helix 3 148..178 CDD:320458 15/29 (52%)
TM helix 4 190..212 CDD:320458 5/21 (24%)
TM helix 5 237..267 CDD:320458 11/29 (38%)
TM helix 6 293..323 CDD:320458 10/29 (34%)
TM helix 7 333..358 CDD:320458 11/24 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 397..449 8/39 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 547..593
Blue background indicates that the domain is not in the aligned region.

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