DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh2 and opn3

DIOPT Version :10

Sequence 1:NP_524398.1 Gene:Rh2 / 42261 FlyBaseID:FBgn0003248 Length:381 Species:Drosophila melanogaster
Sequence 2:NP_001104634.1 Gene:opn3 / 561815 ZFINID:ZDB-GENE-080227-16 Length:387 Species:Danio rerio


Alignment Length:322 Identity:94/322 - (29%)
Similarity:157/322 - (48%) Gaps:35/322 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 NVLPDMAHLVNPYWSRFAPMDPMMSKILGLFTL-AIMIISCCGNGVVVYIFGGTKSLRTPANLLV 96
            |..|..|||.| |...||   ....|:| .||: :|.::..|.|.:|:.::...|.||||.|||:
Zfish     5 NETPTEAHLEN-YNYIFA---DETYKLL-TFTIGSIGVLGFCNNIIVIILYSRYKRLRTPTNLLI 64

  Fly    97 LNLAFSDFCMMASQSPVMIINFYYETWVLGPLWCDIYAG-CGSLFGCVSIWSMCMIAFDRYNVIV 160
            :|::.||..:..:......::.....||.....| ::.| ..||||.|||.::..:|::||   :
Zfish    65 VNISVSDLLVSLTGVNFTFVSCVKRRWVFNSATC-VWDGFSNSLFGIVSIMTLSGLAYERY---I 125

  Fly   161 KGINGTPMTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVPEGNLTACSIDYMTRMWNPRSYLITY 225
            :.::...:....:...|..||:.::.||..||:||:.|..|.:...||:|:.::..|..|:::.:
Zfish   126 RVVHAKVVDFPWAWRAITHIWLYSLAWTGAPLLGWNRYTLEVHQLGCSLDWASKDPNDASFILFF 190

  Fly   226 SLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSSEDCDK-------SAEGKLAK 283
            .|..::.|:.::.|.|..|:                ..||.|||.:|...       ..|.|:|.
Zfish   191 LLGCFFVPVGVMVYCYGNIL----------------YTVKMLRSIQDLQTVQTIKILRYEKKVAV 239

  Fly   284 VALTTISLWFMAWTPYLVICYFGLF-KIDGLTPLTTIWGATFAKTSAVYNPIVYGISHPKYR 344
            :.|..||.:.:.||||.|:.....| |...::|...|..:.|||:|..|||::|.....|:|
Zfish   240 MFLMMISCFLVCWTPYAVVSMLEAFGKKSVVSPTVAIIPSLFAKSSTAYNPVIYAFMSRKFR 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh2NP_524398.1 7tmA_photoreceptors_insect 59..347 CDD:320207 84/296 (28%)
TM helix 1 59..85 CDD:320207 7/26 (27%)
TM helix 2 92..118 CDD:320207 6/25 (24%)
TM helix 3 130..160 CDD:320207 12/30 (40%)
TM helix 4 171..191 CDD:320207 5/19 (26%)
TM helix 5 218..247 CDD:320207 6/28 (21%)
TM helix 6 276..306 CDD:320207 11/29 (38%)
TM helix 7 315..340 CDD:320207 10/24 (42%)
opn3NP_001104634.1 7tmA_Encephalopsin 26..304 CDD:320206 85/297 (29%)
TM helix 1 27..53 CDD:320206 7/26 (27%)
TM helix 2 60..87 CDD:320206 6/26 (23%)
TM helix 3 98..128 CDD:320206 12/33 (36%)
TM helix 4 136..158 CDD:320206 6/21 (29%)
TM helix 5 183..213 CDD:320206 6/45 (13%)
TM helix 6 232..262 CDD:320206 11/29 (38%)
TM helix 7 272..297 CDD:320206 10/24 (42%)

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