DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh2 and parapinopsinb

DIOPT Version :10

Sequence 1:NP_524398.1 Gene:Rh2 / 42261 FlyBaseID:FBgn0003248 Length:381 Species:Drosophila melanogaster
Sequence 2:NP_001428334.1 Gene:parapinopsinb / 368725 ZFINID:ZDB-GENE-030616-134 Length:339 Species:Danio rerio


Alignment Length:323 Identity:75/323 - (23%)
Similarity:146/323 - (45%) Gaps:32/323 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 MSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDF-CMMASQSPVMIINF- 118
            :|.::.:|::..:::    |..|:.:....|.||.|.|..::|||.:|. ..:....|.::.|. 
Zfish    32 LSLLMAVFSITSVVL----NATVIVVTLRHKQLRQPLNFALVNLAVADLGTTLTGSVPSVVTNAV 92

  Fly   119 -YYETWVLGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGINGTPMTIKTSIMKILFIWM 182
             ||   :.|.:.|.:...|.:.||..::.::.:||.:|..|:.:.:.......:.:...:|..|:
Zfish    93 GYY---ITGRIGCVLEGFCVAFFGISALCTVALIAVERLFVVCRPLGSITFQSRHAAGGLLSCWL 154

  Fly   183 MAVFWTVMPLIGWSAYVPEGNLTACSIDYMTRMWNPRSYLITYSLFVYYTPLFLICYSY-WFIIA 246
            .::.|...||:||.:|..||..|:|...:.:|.....||:|.|....:..|..:|..|| |.:. 
Zfish   155 WSLIWNTPPLLGWGSYQLEGAGTSCGPHWQSRELRDVSYIICYFSVCFAVPFAIILVSYSWLLY- 218

  Fly   247 AVAAHEKAMREQAKKMNVKSLRSSEDCDKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLFKID 311
                   .:|:.||.....:.|        ||.::|.:.:..:..:.::|.||..:....:.|.:
Zfish   219 -------TLRQVAKVGGGAAAR--------AEARVAWMVVMMVLAFLVSWLPYAALALTVVSKPE 268

  Fly   312 -GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVFGNTDEPKPDAPASDTET 373
             .|..|..:.....||:|.||||::|...:.:::   :...|..:.|....|..| ..|:.:|
Zfish   269 VQLAVLVKVLPIYMAKSSTVYNPLIYIYMNKQFQ---RYAIPFLMCGKDPWPSED-DVSEVQT 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh2NP_524398.1 7tmA_photoreceptors_insect 59..347 CDD:320207 68/292 (23%)
TM helix 1 59..85 CDD:320207 3/25 (12%)
TM helix 2 92..118 CDD:320207 6/26 (23%)
TM helix 3 130..160 CDD:320207 8/29 (28%)
TM helix 4 171..191 CDD:320207 3/19 (16%)
TM helix 5 218..247 CDD:320207 9/29 (31%)
TM helix 6 276..306 CDD:320207 6/29 (21%)
TM helix 7 315..340 CDD:320207 9/24 (38%)
parapinopsinbNP_001428334.1 None

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