DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh2 and CCHa2-R

DIOPT Version :9

Sequence 1:NP_524398.1 Gene:Rh2 / 42261 FlyBaseID:FBgn0003248 Length:381 Species:Drosophila melanogaster
Sequence 2:NP_001356958.1 Gene:CCHa2-R / 35535 FlyBaseID:FBgn0033058 Length:501 Species:Drosophila melanogaster


Alignment Length:385 Identity:89/385 - (23%)
Similarity:160/385 - (41%) Gaps:81/385 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 AQSSGNGSVLDNVLP--------------DMAHLVNPYWSRFAPMDPMMSK-----ILGLFTLAI 67
            |.|.|||:....:|.              ||.|..:.. ....|..|::.:     :..|:|| |
  Fly    17 ADSDGNGANDSGLLATGQGLEQEQEGLALDMGHNASAD-GGIVPYVPVLDRPETYIVTVLYTL-I 79

  Fly    68 MIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQSPVMIINFYYETWVLGPLWC-- 130
            .|:...|||.:|.||...:|:|...|..:|:||.:|..::....||..|.:..|:|......|  
  Fly    80 FIVGVLGNGTLVIIFFRHRSMRNIPNTYILSLALADLLVILVCVPVATIVYTQESWPFERNMCRI 144

  Fly   131 -----DIYAGCGSLFGCVSIWSMCMIAFDRYNVIV---KGINGTPMTIKTSIMKILFIWMMAVFW 187
                 ||..|       ||::::..::.:||..||   :.:...|:|:.|::|    ||::|:. 
  Fly   145 SEFFKDISIG-------VSVFTLTALSGERYCAIVNPLRKLQTKPLTVFTAVM----IWILAIL- 197

  Fly   188 TVMPLI------GWSAYVPEGNLTACSIDYMTRMWNPR--SYLITYSLFVYY-TPLFLICYSYWF 243
            ..||.:      .:..:...||:|   |:..:...:|.  .:::.....||| .||.:|...|  
  Fly   198 LGMPSVLFSDIKSYPVFTATGNMT---IEVCSPFRDPEYAKFMVAGKALVYYLLPLSIIGALY-- 257

  Fly   244 IIAAVAAHEKAMREQAKKMNVKSLRSSEDCDKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLF 308
            |:.|...|..|.....::.:::|...:.     |...:|::.:..:.::|:.:.||.|   |.|:
  Fly   258 IMMAKRLHMSARNMPGEQQSMQSRTQAR-----ARLHVARMVVAFVVVFFICFFPYHV---FELW 314

  Fly   309 ---------KIDGLTPLTTIWGATFAKTSAVYNPI----VYGISHPKYRIVLKEKCPMCV 355
                     ..|....:..|.|...:..::..||:    |.|:....:...|   |.:||
  Fly   315 YHFYPTAEEDFDEFWNVLRIVGFCTSFLNSCVNPVALYCVSGVFRQHFNRYL---CCICV 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh2NP_524398.1 7tm_4 67..>237 CDD:304433 49/188 (26%)
7tm_1 74..336 CDD:278431 67/293 (23%)
CCHa2-RNP_001356958.1 7tmA_Bombesin_R-like 70..362 CDD:320593 74/317 (23%)
TM helix 1 71..97 CDD:320593 11/26 (42%)
TM helix 2 104..130 CDD:320593 8/25 (32%)
TM helix 3 142..172 CDD:320593 8/36 (22%)
TM helix 4 182..202 CDD:320593 8/24 (33%)
TM helix 5 234..259 CDD:320593 7/26 (27%)
TM helix 6 285..315 CDD:320593 8/37 (22%)
TM helix 7 330..355 CDD:320593 4/24 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45695
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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