Protein Alignment Rh2 and Rrh

DIOPT Version :10

• Sequence 1: NP_524398.1
• Gene: Rh2 / 42261
• FlyBaseID: FBgn0003248
• Length: 381
• Species: Drosophila melanogaster
• Sequence 2: NP_001401989.1
• Gene: Rrh / 310869
• RGDID: 1308948
• Length: 337
• Species: Rattus norvegicus
• Alignment Length: 335
• Identity: 95/335 - (28%)
• Similarity: 161/335 - (48%)
• Gaps: 56/335 - (16%)

  Fly    24 SSGNGSVLDNVLPDMAHLVNPYWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSL 88
            |||:||. .:|.....|                 .|:..:.:...|||...|.:|:.||...|.|
  Rat    10 SSGSGSE-GSVFTKSEH-----------------SIIAAYLIVAGIISILSNIIVLGIFIKYKEL 56

  Fly    89 RTPANLLVLNLAFSDFCMMASQSPVMIINFYYETWVLGPLWCDIYAGCGSLFGCVSIWSMCMIAF 153
            |||.|.:::||||:|..:.:...|:...:..:.:|..|...|.:|||....||.|||..:.::|.
  Rat    57 RTPTNAVIINLAFTDIGVSSIGYPMSAASDLHGSWKFGHAGCQVYAGLNIFFGMVSIGLLTVVAL 121

  Fly   154 DRYNVIVKGINGTPMTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVPEGNLTACSIDYMTRMWNP 218
            |||..|.....|..||..|.:..:|..|:..:||.:||::||::|.|:.....|:|::..   |.
  Rat   122 DRYLTISCPDVGRRMTGNTYLSMVLGAWINGLFWALMPIVGWASYAPDPTGATCTINWRK---ND 183

  Fly   219 RSYLITYSLFV----YYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSSEDC------ 273
            .|: ::|::.|    :..||.::.|.|:.:       .::||          |.::.:|
  Rat   184 TSF-VSYTMMVIVVNFIVPLTVMFYCYYHV-------SQSMR----------LSAASNCTTHLNR 230

  Fly   274 DKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLF----KIDGLTPLTTIWGATFAKTSAVYNPI 334
            |.:.:..:.|:::..|.::.:||:||.|:|.:..|    ||   .|...|....|||:|..|||.
  Rat   231 DWAHQADVTKMSVMMILMFLLAWSPYSVVCLWACFGNPKKI---PPSLAIIAPLFAKSSTFYNPC 292

  Fly   335 VYGISHPKYR 344
            :|..::.|:|
  Rat   293 IYVAANKKFR 302

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh2	NP_524398.1	7tmA_photoreceptors_insect	59..347	CDD:320207	88/300 (29%)
		TM helix 1	59..85	CDD:320207	8/25 (32%)
		TM helix 2	92..118	CDD:320207	7/25 (28%)
		TM helix 3	130..160	CDD:320207	13/29 (45%)
		TM helix 4	171..191	CDD:320207	5/19 (26%)
		TM helix 5	218..247	CDD:320207	7/32 (22%)
		TM helix 6	276..306	CDD:320207	8/29 (28%)
		TM helix 7	315..340	CDD:320207	10/24 (42%)
Rrh	NP_001401989.1	7tmA_Peropsin	26..305	CDD:320201	88/301 (29%)
		TM helix 1	27..53	CDD:320201	8/25 (32%)
		TM helix 2	60..87	CDD:320201	7/26 (27%)
		TM helix 3	98..128	CDD:320201	13/29 (45%)
		TM helix 4	141..159	CDD:320201	4/17 (24%)
		TM helix 5	186..216	CDD:320201	6/37 (16%)
		TM helix 6	233..263	CDD:320201	8/29 (28%)
		TM helix 7	273..298	CDD:320201	10/24 (42%)