Protein Alignment Rh2 and npr-4

DIOPT Version :10

• Sequence 1: NP_524398.1
• Gene: Rh2 / 42261
• FlyBaseID: FBgn0003248
• Length: 381
• Species: Drosophila melanogaster
• Sequence 2: NP_001300304.1
• Gene: npr-4 / 182684
• WormBaseID: WBGene00007635
• Length: 490
• Species: Caenorhabditis elegans
• Alignment Length: 373
• Identity: 76/373 - (20%)
• Similarity: 134/373 - (35%)
• Gaps: 92/373 - (24%)

  Fly    27 NGSVLDNVLPDMAHLVNPYW-------SRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGG 84
            |||       |..:|.:..|       ||:..|  ::...|.|..:|..||   ||..|:.....
 Worm    24 NGS-------DCLNLNSELWLYREDLSSRWYIM--LVFAFLYLIIIAAGII---GNSCVILAITR 76

  Fly    85 TKSLRTPANLLVLNLAFSDFCMMASQSPVMIINFYYETWVLGPLWCDIYAGCGSLFGCVSIWSMC 149
            .|||:|..||.:|:|:.||..:..:.:.:..|..:.:.|:.|...|.|......:..|.|.:::.
 Worm    77 NKSLQTVPNLFILSLSCSDIVVCCTSATITPITAFKKEWIFGEALCRIAPFIAGISLCFSTFTLT 141

  Fly   150 MIAFDRYNVIVKGINGTPMTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVPEGNLTACSIDYMTR 214
            .|:.||| ::::.....|:|...::..|..|...|.  |:...|.:...:.|.. ..|. .|.|.
 Worm   142 AISIDRY-ILIRFPMRKPITHYQAVGVIAIICAFAA--TITSPIMFKQKLGEFE-NFCG-QYCTE 201

  Fly   215 MWNP-----RSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSSEDCD 274
            .|..     :.|...........||.:|..||..|...:.  :..:.:.|||...    .:.:.:
 Worm   202 NWGANESQRKIYGAALMFLQLVIPLTIIIISYTAISLKIG--QSMILKGAKKQKT----DNWEME 260

  Fly   275 KSAEGKLA--------KVALTTISLWFMAWTPYLVICYFGLFKIDGLTPLTTIWGATF------- 324
            .|.:.::|        ::.:..:..:..:|                      ||..||
 Worm   261 LSDQQRIAVKRRQRTNRMLIGMVVAFACSW----------------------IWSVTFNILRDYE 303

  Fly   325 --------------------AKTSAVYNPIVYGISHPKYRIVLKEKCP 352
                                |.||.|:||::|.:.:.:.|....:..|
 Worm   304 YLPELIKTQEYIFGIATHCIAMTSTVWNPLLYAVLNLQLRAAFIDLMP 351

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh2	NP_524398.1	7tmA_photoreceptors_insect	59..347	CDD:320207	66/327 (20%)
		TM helix 1	59..85	CDD:320207	8/25 (32%)
		TM helix 2	92..118	CDD:320207	7/25 (28%)
		TM helix 3	130..160	CDD:320207	8/29 (28%)
		TM helix 4	171..191	CDD:320207	4/19 (21%)
		TM helix 5	218..247	CDD:320207	7/33 (21%)
		TM helix 6	276..306	CDD:320207	3/37 (8%)
		TM helix 7	315..340	CDD:320207	11/51 (22%)
npr-4	NP_001300304.1	7tmA_NPYR-like	50..346	CDD:320331	66/331 (20%)
		TM helix 1	51..77	CDD:320331	8/28 (29%)
		TM helix 2	84..109	CDD:320331	6/24 (25%)
		TM helix 3	122..152	CDD:320331	8/30 (27%)
		TM helix 4	163..184	CDD:320331	5/22 (23%)
		TM helix 5	210..239	CDD:320331	7/28 (25%)
		TM helix 6	270..300	CDD:320331	5/51 (10%)
		TM helix 7	314..339	CDD:320331	7/24 (29%)