DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh2 and Opn3

DIOPT Version :9

Sequence 1:NP_524398.1 Gene:Rh2 / 42261 FlyBaseID:FBgn0003248 Length:381 Species:Drosophila melanogaster
Sequence 2:NP_034228.1 Gene:Opn3 / 13603 MGIID:1338022 Length:400 Species:Mus musculus


Alignment Length:342 Identity:82/342 - (23%)
Similarity:154/342 - (45%) Gaps:49/342 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 APM-DPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQSPV 113
            ||: .|...:.|.|....:.::...||.:|:.::.....||||.:|.::||:..|..:.......
Mouse    31 APLFSPTAYERLALLLGCLALLGVGGNLLVLLLYSKFPRLRTPTHLFLVNLSLGDLLVSLFGVTF 95

  Fly   114 MIINFYYETWVLGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGINGTPMTIKTSIMKIL 178
            ...:.....||...:.|......|||||.|||.::.::|::||   ::.::...:....:...|.
Mouse    96 TFASCLRNGWVWDAVGCAWDGFSGSLFGFVSITTLTVLAYERY---IRVVHARVINFSWAWRAIT 157

  Fly   179 FIWMMAVFWTVMPLIGWSAYVPEGNLTACSIDYMTRMWNPRSYLITYSLFVYYTPLFLICYSYWF 243
            :||:.::.|...||:||:.|:.:.:...|::|:.::..|..|:::...|.....|:.:|.:.|..
Mouse   158 YIWLYSLAWAGAPLLGWNRYILDIHGLGCTVDWRSKDANDSSFVLFLFLGCLVVPVGIIAHCYGH 222

  Fly   244 IIAAVAAHEKAMREQAKKMNVKSLRSSEDCDK-------SAEGKLAKVALTTISLWFMAWTPYLV 301
            |:                .:|:.||..||...       ..|.|:||:......::...|.||:|
Mouse   223 IL----------------YSVRMLRCVEDLQTIQVIKMLRYEKKVAKMCFLMAFVFLTCWMPYIV 271

  Fly   302 ICYFGLFKIDG----LTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKE-------KCPMCV 355
            ..:   ..::|    :||..:|....|||:|.||||::|...:.|:|..|.:       :|    
Mouse   272 TRF---LVVNGYGHLVTPTVSIVSYLFAKSSTVYNPVIYIFMNRKFRRSLLQLLCFRLLRC---- 329

  Fly   356 FGNTDEPKPDAPASDTE 372
                ..|..:.||:::|
Mouse   330 ----QRPAKNLPAAESE 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh2NP_524398.1 7tm_4 67..>237 CDD:304433 40/169 (24%)
7tm_1 74..336 CDD:278431 68/272 (25%)
Opn3NP_034228.1 7tm_1 65..307 CDD:278431 65/263 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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