DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh2 and LOC11175546

DIOPT Version :10

Sequence 1:NP_524398.1 Gene:Rh2 / 42261 FlyBaseID:FBgn0003248 Length:381 Species:Drosophila melanogaster
Sequence 2:XP_003435759.2 Gene:LOC11175546 / 11175546 -ID:- Length:370 Species:Anopheles gambiae


Alignment Length:368 Identity:214/368 - (58%)
Similarity:266/368 - (72%) Gaps:8/368 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 PRFQA--QSSGNGSVLDNVLPDMAHLVNPYWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVY 80
            |.|.|  ||.||.||:|.|.|:|.|:|:|:|::|..|:|:...|||.....:.:||..|||.|:|
Mosquito     7 PHFDAWTQSGGNMSVVDKVPPEMLHMVHPHWNQFPLMNPLWHSILGFAIFMLGMISMTGNGCVMY 71

  Fly    81 IFGGTKSLRTPANLLVLNLAFSDFCMMASQSPVMIINFYYETWVLGPLWCDIYAGCGSLFGCVSI 145
            ||..|||||||:||||:|||||||.||.:..|.|:||.::|||..||..|::||..||||||.||
Mosquito    72 IFTNTKSLRTPSNLLVVNLAFSDFFMMFTMGPPMVINCWHETWTFGPFACELYAMLGSLFGCASI 136

  Fly   146 WSMCMIAFDRYNVIVKGINGTPMTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVPEGNLTACSID 210
            |:|.|||||||||||||:.|.|||...::::||.:|:.|:|||:.||.||:.||||||:|||..|
Mosquito   137 WTMTMIAFDRYNVIVKGLAGKPMTNNGALLRILGVWVFALFWTLAPLFGWNRYVPEGNMTACGTD 201

  Fly   211 YMTRMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSSEDCDK 275
            |:|:.|..|||:|.|::|||:.||..|.|||.||:.||:||||.||||||||||.|||:.|..:.
Mosquito   202 YLTQTWLSRSYIIIYAIFVYWLPLLTIIYSYTFILKAVSAHEKNMREQAKKMNVASLRTQEAQNT 266

  Fly   276 SAEGKLAKVALTTISLWFMAWTPYLVICYFGLFKIDGLTPLTTIWGATFAKTSAVYNPIVYGISH 340
            |.|.|||||||.|||||||||||||||.:.|:||...::||.||||:.|||.:||||||||||||
Mosquito   267 STEMKLAKVALVTISLWFMAWTPYLVINFTGIFKAAPISPLATIWGSLFAKANAVYNPIVYGISH 331

  Fly   341 PKYRIVLKEKCP--MCVFGNTDEPKPDAPASDTETTSEADSKA 381
            ||||..|.:|.|  .|    .|.|..|..:..:..|..:|.||
Mosquito   332 PKYRAALYQKFPSLSC----QDAPVDDGQSVASGATQASDEKA 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh2NP_524398.1 7tmA_photoreceptors_insect 59..347 CDD:320207 183/287 (64%)
TM helix 1 59..85 CDD:320207 12/25 (48%)
TM helix 2 92..118 CDD:320207 16/25 (64%)
TM helix 3 130..160 CDD:320207 22/29 (76%)
TM helix 4 171..191 CDD:320207 7/19 (37%)
TM helix 5 218..247 CDD:320207 16/28 (57%)
TM helix 6 276..306 CDD:320207 24/29 (83%)
TM helix 7 315..340 CDD:320207 19/24 (79%)
LOC11175546XP_003435759.2 None

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