DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh2 and tmtops3b

DIOPT Version :9

Sequence 1:NP_524398.1 Gene:Rh2 / 42261 FlyBaseID:FBgn0003248 Length:381 Species:Drosophila melanogaster
Sequence 2:NP_001269304.1 Gene:tmtops3b / 102031126 ZFINID:ZDB-GENE-091204-311 Length:379 Species:Danio rerio


Alignment Length:390 Identity:101/390 - (25%)
Similarity:175/390 - (44%) Gaps:55/390 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 FQAQSSGNGSVLDNVLP-DMAHLVNPYWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFG 83
            |...||.|||:||::.| |........::       :::.|||:    |.:.....|.||:.:|.
Zfish     6 FLRDSSVNGSLLDSLSPADQTGFSRAGYT-------VVAVILGI----IFVFGFLCNFVVLLVFA 59

  Fly    84 GTKSLRTPANLLVLNLAFSDFCMMASQSPVMIINFYYETWVLGPLWCDIYAGCGSLFGCVSIWSM 148
            ....||||.||::||:..||..:....:|:......:..|:.|...|..|....:|||.||:.|:
Zfish    60 RFHVLRTPINLILLNIIVSDMLVCLFGTPLSFAASVHGRWLTGVHGCRWYGFANALFGIVSLVSL 124

  Fly   149 CMIAFDRYNVIVKGINGTPMTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVPEGNLTACSIDYMT 213
            .:::::||:.|:..........:.:.:.|...|:.::.|||.||:|||:|.|||..|.||:.:..
Zfish   125 AVLSYERYSTILCSSKADASDYRKAWLFITGCWLYSLLWTVPPLLGWSSYGPEGPGTTCSVQWNK 189

  Fly   214 RMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSSEDCDKSAE 278
            |....|||:|...:|....||.|:.|.|..|:.|:....|..:..|::               .|
Zfish   190 RSPETRSYVICLFVFCLLLPLLLMVYCYGKILIAIHGVAKINQTAAQR---------------RE 239

  Fly   279 GKLAKVALTTISLWFMAWTPYLVICYFGLFKIDGLTPLTTIWGATFAKTSAVYNPIVYGI----- 338
            ..:..:.::.:|.:.:.|.||.|:...|.|.....:|..::..:..||:|.|.|||:|.:     
Zfish   240 THVLVMVVSMVSCYLLCWMPYGVMALLGTFSAGITSPTASVVSSLLAKSSTVLNPIIYVLFNNQF 304

  Fly   339 -----------SHPKYRIVL-------KEKC-PMCVFGNTDEPKP----DAPASDTETTSEADSK 380
                       :.|...:.|       ::.| ||.::..|..|:.    |.|.....::.:..:|
Zfish   305 YRCFIALVRSGAEPPVHLTLHTEEGAAQQHCIPMGLYAATSPPESPSLMDTPQMTQNSSLQRGNK 369

  Fly   381  380
            Zfish   370  369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh2NP_524398.1 7tm_4 67..>237 CDD:304433 54/169 (32%)
7tm_1 74..336 CDD:278431 76/261 (29%)
tmtops3bNP_001269304.1 7tm_1 51..297 CDD:278431 76/260 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X120
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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