DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh2 and opn4b

DIOPT Version :9

Sequence 1:NP_524398.1 Gene:Rh2 / 42261 FlyBaseID:FBgn0003248 Length:381 Species:Drosophila melanogaster
Sequence 2:NP_001245153.1 Gene:opn4b / 100884131 ZFINID:ZDB-GENE-080415-3 Length:565 Species:Danio rerio


Alignment Length:371 Identity:126/371 - (33%)
Similarity:197/371 - (53%) Gaps:59/371 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 LPDMAHLVNPYWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNL 99
            :||.||..                 :|...||:.|....||.:|:|.|..::|||||||:.::||
Zfish    63 VPDHAHYT-----------------IGSVILAVGITGMVGNLLVMYAFCKSRSLRTPANMFIINL 110

  Fly   100 AFSDFCMMASQSPVMIINFYYETWVLGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVK--- 161
            |.:||.|..:|:|:......::.|:.|...|::||.||:|||..|:.::.:||.|||.||.:   
Zfish   111 AVTDFLMCVTQTPIFFTTSLHKRWIFGEKGCELYAFCGALFGICSMITLMIIAVDRYFVITRPLA 175

  Fly   162 --GINGTPMTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVPEGNLTACSIDYMTRMWNPRSYLIT 224
              |:    |:.|.:::.:...|..::.|::.|..|||||||||.||:||.||||...:.|:|.:.
Zfish   176 SIGV----MSRKRALLILSAAWAYSMGWSLPPFFGWSAYVPEGLLTSCSWDYMTFSPSVRAYTML 236

  Fly   225 YSLFVYYTPLFLICYSYWFIIAAVAAHEKAM----REQAKKMNVKSLRSSEDCDKSAEGKLAKVA 285
            ...||::.|||:|.|.|:||..|:....:|:    .|...:.::|.:...::     |.|:||:|
Zfish   237 LFTFVFFIPLFVIIYCYFFIFKAIRETNRAVGKINGEGGPRDSIKKIHRMKN-----EWKMAKIA 296

  Fly   286 LTTISLWFMAWTPY--LVICYFGLFKIDGLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLK 348
            |..|.|:.::|:||  :.:..|..: .|.|||......|..||.||::|||:|.|:|||||..:.
Zfish   297 LIVILLYVISWSPYSCVALTAFAGY-ADMLTPYMNSVPAVIAKASAIHNPIIYAITHPKYRSAIA 360

  Fly   349 EKCP-----MCVFGNTDEPKPDAPASD----------TETTSEADS 379
            :..|     :||      |:.|..:|.          |..:||..|
Zfish   361 KYIPCLGVLLCV------PRRDRFSSSSFISTRRSTLTSQSSETSS 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh2NP_524398.1 7tm_4 67..>237 CDD:304433 69/174 (40%)
7tm_1 74..336 CDD:278431 101/272 (37%)
opn4bNP_001245153.1 7tm_4 78..>305 CDD:304433 86/235 (37%)
7tm_1 85..348 CDD:278431 101/272 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590462
Domainoid 1 1.000 192 1.000 Domainoid score I3159
eggNOG 1 0.900 - - E33208_3BCHK
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 212 1.000 Inparanoid score I3623
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D389088at33208
OrthoFinder 1 1.000 - - FOG0001799
OrthoInspector 1 1.000 - - mtm6356
orthoMCL 1 0.900 - - OOG6_104608
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X120
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.700

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