Protein Alignment Rh2 and opnva

DIOPT Version :10

• Sequence 1: NP_524398.1
• Gene: Rh2 / 42261
• FlyBaseID: FBgn0003248
• Length: 381
• Species: Drosophila melanogaster
• Sequence 2: NP_001265680.1
• Gene: opnva / 100489056
• XenbaseID: XB-GENE-29209071
• Length: 382
• Species: Xenopus tropicalis
• Alignment Length: 360
• Identity: 93/360 - (25%)
• Similarity: 164/360 - (45%)
• Gaps: 42/360 - (11%)

  Fly    27 NGSVLDNVLPDMAHLVNPYWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTP 91
            |.|:|  ..|:.:.:.||:......::.....:|......:..:|...|.:|:.:....|.||.|
 Frog     4 NVSLL--ATPENSTVWNPFTGPLKTIEAWNFHLLAALMFVVTSLSIAENFIVILVTAKFKQLRQP 66

  Fly    92 ANLLVLNLAFSDFCMMASQSPVMIIN-----FYYETWVLGPLWCDIYAGCGSLFGCVSIWSMCMI 151
            .|.:::||:.:||.:......:.|..     ||..:|.     |.:.....:.||.|::||:.::
 Frog    67 LNYIIVNLSVADFLVSVIGGTISIATNSRGYFYLGSWA-----CVLEGFAVTFFGIVALWSLSVL 126

  Fly   152 AFDRYNVIVKGINGTPMTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVPEGNLTACSIDYMTRMW 216
            ||:||.||.:.:....:..|.|.:.|:|:|:.:..||:.|.:|||:|......|.|..::.:...
 Frog   127 AFERYIVICRPLGNLRLQGKHSALAIIFVWVFSFVWTIPPTMGWSSYTTSKIGTTCEPNWYSGEM 191

  Fly   217 NPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSSEDCDKSAEGKL 281
            ...:|:||:....:..||.:|..||          .|.||:..|..:.:....|   .:..|.::
 Frog   192 RDHTYIITFLTTCFVFPLLVIFMSY----------GKLMRKLRKVSDTQGRLGS---TRKPEKEV 243

  Fly   282 AKVALTTISLWFMAWTPYLVICYFGLF-----KIDGLTPLTTIWGATFAKTSAVYNPIVYGISHP 341
            .::.:..|..:.:.||||..   |.:.     .|| |.|......|.||||:::||||:|...:.
 Frog   244 TRMVVIMILAFLICWTPYAA---FSILITAHPTID-LDPRLAAIPAFFAKTASMYNPIIYVYMNK 304

  Fly   342 KYRIVLKEKCPMCVFGNTDEPKPDAPASDTETTSE 376
            ::|     :|...:|...|   |:|..|:...|||
 Frog   305 QFR-----RCLYQMFNIND---PEAKESNLNPTSE 331

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh2	NP_524398.1	7tmA_photoreceptors_insect	59..347	CDD:320207	78/297 (26%)
		TM helix 1	59..85	CDD:320207	4/25 (16%)
		TM helix 2	92..118	CDD:320207	6/30 (20%)
		TM helix 3	130..160	CDD:320207	11/29 (38%)
		TM helix 4	171..191	CDD:320207	7/19 (37%)
		TM helix 5	218..247	CDD:320207	8/28 (29%)
		TM helix 6	276..306	CDD:320207	6/29 (21%)
		TM helix 7	315..340	CDD:320207	11/24 (46%)
opnva	NP_001265680.1	7tmA_VA_opsin	20..310	CDD:320210	78/316 (25%)
		TM helix 1	34..60	CDD:320210	4/25 (16%)
		TM helix 2	67..94	CDD:320210	6/26 (23%)
		TM helix 3	105..135	CDD:320210	11/29 (38%)
		TM helix 4	148..166	CDD:320210	6/17 (35%)
		TM helix 5	193..223	CDD:320210	11/39 (28%)
		TM helix 6	238..268	CDD:320210	7/32 (22%)
		TM helix 7	278..303	CDD:320210	11/24 (46%)